DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmgcl and Hmgcl

DIOPT Version :10

Sequence 1:NP_609089.1 Gene:Hmgcl / 33978 FlyBaseID:FBgn0031877 Length:323 Species:Drosophila melanogaster
Sequence 2:NP_077362.1 Gene:Hmgcl / 79238 RGDID:620554 Length:325 Species:Rattus norvegicus


Alignment Length:310 Identity:191/310 - (61%)
Similarity:239/310 - (77%) Gaps:4/310 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 ILALTAKRTAVTSA----ANQVRIVEVGPRDGLQNEPKLLPAATKIELINQLSETGLRTIEATSF 69
            ::.|.:.|.|.||:    ..:|:|||||||||||||..::|...||:||:.|||.||..||||||
  Rat    12 LVGLASLRAASTSSMGTLPKRVKIVEVGPRDGLQNEKSIVPTPVKIKLIDMLSEAGLPVIEATSF 76

  Fly    70 VSAKWVPQMGDNAEVLKGIRKVTGISYPVLTPNLKGFESALEAGAEEVAVFGAASDAFSLKNVNC 134
            ||.||||||.|:::|||||:|..||:|||||||:||||.|:.|||:||::|||||:.|:.|||||
  Rat    77 VSPKWVPQMADHSDVLKGIQKFPGINYPVLTPNMKGFEEAVAAGAKEVSIFGAASELFTRKNVNC 141

  Fly   135 TAAEAIERFKPVLKAAQKHGVRVRGYVSTVVGCPYEGAVAPSAVVKVVEALYQMGCYEISLGDTI 199
            :..|:.:||..|::||:...:.||||||..:||||||.|:|:.|.:|.:.||.||||||||||||
  Rat   142 SIEESFQRFDGVMQAARAASISVRGYVSCALGCPYEGKVSPAKVAEVAKKLYSMGCYEISLGDTI 206

  Fly   200 GVGTPGTMRRMLDEVTKVVPAKDLAVHCHDTYGQALSNILVSLDYGIRVVDSSVSGLGGCPYAKG 264
            ||||||.|:.||..|...||...|||||||||||||:|.||:|..|:.||||||:||||||||||
  Rat   207 GVGTPGLMKDMLTAVLHEVPVAALAVHCHDTYGQALANTLVALQMGVSVVDSSVAGLGGCPYAKG 271

  Fly   265 ASGNAATEDVVYLLHGMGLDTGVNLDKLIQVGRYICTELGRTSESKVNRA 314
            ||||.||||:||:|.|:|:.|||||.||::.|.:||..|.|.:.|||.:|
  Rat   272 ASGNLATEDLVYMLTGLGIHTGVNLQKLLEAGDFICQALNRKTSSKVAQA 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgclNP_609089.1 DRE_TIM_HMGL 28..300 CDD:163676 177/271 (65%)
HmgclNP_077362.1 TIM-like beta/alpha barrel domains 17..325 CDD:473867 190/305 (62%)
Microbody targeting signal. /evidence=ECO:0000255 323..325
Blue background indicates that the domain is not in the aligned region.

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