DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmgcl and hmgcll1

DIOPT Version :9

Sequence 1:NP_001285696.1 Gene:Hmgcl / 33978 FlyBaseID:FBgn0031877 Length:323 Species:Drosophila melanogaster
Sequence 2:NP_001103870.1 Gene:hmgcll1 / 571388 ZFINID:ZDB-GENE-080220-15 Length:335 Species:Danio rerio


Alignment Length:289 Identity:176/289 - (60%)
Similarity:234/289 - (80%) Gaps:0/289 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 VRIVEVGPRDGLQNEPKLLPAATKIELINQLSETGLRTIEATSFVSAKWVPQMGDNAEVLKGIRK 90
            |:|||||||||||||.:::|...||:||:.||:|||..||||||||:|||.||.|:..|||||::
Zfish    43 VKIVEVGPRDGLQNEKEIVPTEVKIQLIDLLSQTGLPVIEATSFVSSKWVAQMADHTAVLKGIKR 107

  Fly    91 VTGISYPVLTPNLKGFESALEAGAEEVAVFGAASDAFSLKNVNCTAAEAIERFKPVLKAAQKHGV 155
            ...:.|||||||::||::|:.|||.||||||:||:.||.||:||:..|:::||:.|:.||::.|:
Zfish   108 SPDVRYPVLTPNIQGFQAAVAAGANEVAVFGSASETFSRKNINCSIEESLQRFEQVVSAAKQEGI 172

  Fly   156 RVRGYVSTVVGCPYEGAVAPSAVVKVVEALYQMGCYEISLGDTIGVGTPGTMRRMLDEVTKVVPA 220
            .||||||..:||||||.|.||.|.||.:.|:::||||:||||||||||.|:|..||.:|...|||
Zfish   173 PVRGYVSCALGCPYEGQVKPSQVTKVAKRLFELGCYEVSLGDTIGVGTAGSMAEMLSDVLTEVPA 237

  Fly   221 KDLAVHCHDTYGQALSNILVSLDYGIRVVDSSVSGLGGCPYAKGASGNAATEDVVYLLHGMGLDT 285
            ..|||||||||||||.|||::|..|:.|||:||:||||||:|||||||.:|||::|:|||:|::|
Zfish   238 GALAVHCHDTYGQALPNILIALQMGVSVVDASVAGLGGCPFAKGASGNVSTEDLLYMLHGLGIET 302

  Fly   286 GVNLDKLIQVGRYICTELGRTSESKVNRA 314
            ||:|.|:::.|.:||..|.|.:.|||::|
Zfish   303 GVDLLKVMEAGDFICKALNRKTNSKVSQA 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgclNP_001285696.1 HMGL-like 25..299 CDD:279072 168/272 (62%)
DRE_TIM_HMGL 28..300 CDD:163676 167/271 (62%)
hmgcll1NP_001103870.1 PLN02746 39..333 CDD:178347 176/289 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 380 1.000 Domainoid score I801
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 395 1.000 Inparanoid score I1922
OMA 1 1.010 - - QHG55007
OrthoDB 1 1.010 - - D1029775at2759
OrthoFinder 1 1.000 - - FOG0002283
OrthoInspector 1 1.000 - - otm25385
orthoMCL 1 0.900 - - OOG6_101527
Panther 1 1.100 - - O PTHR42738
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4186
SonicParanoid 1 1.000 - - X1709
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1212.010

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