DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hmgcl and lys4

DIOPT Version :9

Sequence 1:NP_001285696.1 Gene:Hmgcl / 33978 FlyBaseID:FBgn0031877 Length:323 Species:Drosophila melanogaster
Sequence 2:NP_596458.1 Gene:lys4 / 2539815 PomBaseID:SPBC1105.02c Length:418 Species:Schizosaccharomyces pombe


Alignment Length:284 Identity:62/284 - (21%)
Similarity:114/284 - (40%) Gaps:30/284 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 SAANQVRIVEVGPRDGLQNEPKLLPAATKIELINQLSETGLRTIEATSFVSAKWVPQMGDNAEVL 85
            |..|...|:|...|:|.|..........||::...|...|:..||.||.|:::   |...:.|.:
pombe    30 SRVNNFSIIESTLREGEQFANAFFDTEKKIQIAKALDNFGVDYIELTSPVASE---QSRQDCEAI 91

  Fly    86 KGIRKVTGISYPVLTP---NLKGFESALEAGAEEVAVFGAASDAFSLKNVNCTAAEAIERFKPVL 147
            ..:    |:...:||.   ::.....|:|.|.:.|.|....|......:........|:....|:
pombe    92 CKL----GLKCKILTHIRCHMDDARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVI 152

  Fly   148 KAAQKHGVRVR-----GYVSTVVGCPYEGAVAPSAVVKVVEALYQMGCYEISLGDTIGVGTPGTM 207
            ...:..|:.||     .:.|.:|.           ::.:.:|:.::|...:.:.||:|..||..:
pombe   153 NFVKSKGIEVRFSSEDSFRSDLVD-----------LLSLYKAVDKIGVNRVGIADTVGCATPRQV 206

  Fly   208 RRMLDEVTKVVPAKDLAVHCHDTYGQALSNILVSLDYGIRVVDSSVSGLG---GCPYAKGASGNA 269
            ..::..:..||.. |:..|.|:..|.|::|...:|:.|...:|:|:.|:|   |...........
pombe   207 YDLIRTLRGVVSC-DIECHFHNDTGMAIANAYCALEAGATHIDTSILGIGERNGITPLGALLARM 270

  Fly   270 ATEDVVYLLHGMGLDTGVNLDKLI 293
            ...|..|:.|...|:....|:.|:
pombe   271 YVTDREYITHKYKLNQLRELENLV 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgclNP_001285696.1 HMGL-like 25..299 CDD:279072 60/280 (21%)
DRE_TIM_HMGL 28..300 CDD:163676 60/277 (22%)
lys4NP_596458.1 DRE_TIM_HCS 35..296 CDD:163685 60/279 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 51 1.000 Domainoid score I3365
eggNOG 1 0.900 - - E1_COG0119
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 54 1.000 Inparanoid score I2040
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - oto100632
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4186
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.890

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