DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SA1 and SCC3

DIOPT Version :10

Sequence 1:NP_477268.2 Gene:SA1 / 33974 FlyBaseID:FBgn0020616 Length:1127 Species:Drosophila melanogaster
Sequence 2:NP_566119.1 Gene:SCC3 / 819410 AraportID:AT2G47980 Length:1098 Species:Arabidopsis thaliana


Alignment Length:1212 Identity:294/1212 - (24%)
Similarity:516/1212 - (42%) Gaps:235/1212 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RGGKRIRMDDPPPDYEELHSDALNESTSDADSPTKRMTRLRARGGVRDKPPIIDDDEDDFFAPIA 69
            :|.||.|  ||..|.::...:|.....|..::..:...:             |:.|:|||     
plant     6 QGLKRSR--DPDQDQDDDSGEAGKADGSGGENQERSSDQ-------------IELDDDDF----- 50

  Fly    70 RKRKTPATRKGPTERKERVERPRKEPVDKGHHERIDSEREITTDENSLYYIVRHSKNPIASIVDQ 134
                        .|.:.:.:|.|..|                 .:.:|..:|:.:.:.|:..|..
plant    51 ------------QETRPKPKRSRTHP-----------------PQQNLIEVVKGNGDLISKAVKI 86

  Fly   135 WIEQYKANRETALVALMQFFINASGCKGKISEDIQYPVDHTSI---------IRRMTEEFDEESG 190
            |:|:|:.:...|...|:.....|.|.|..|.:|:   :|.|.:         :.|..|..|.:|.
plant    87 WVERYEDSPSLATTELLSMLFQACGAKYSIKDDL---LDETDVDDVVVSLVNLARAGELEDYQSS 148

  Fly   191 EYPLIMSGTQWRKFKNNFCDFVQTLVKQCQYSIIYDQFLMDNVISLLTGLSDSQVRAFRHTATLA 255
            .      ..:.:.||.|...|...|:.:||...::|:.|.|..:..:..||.:..|.:|.||||.
plant   149 R------KKELKNFKENLVSFWNNLIIECQNGPLFDRVLFDKCMDYIIALSCTPPRVYRQTATLM 207

  Fly   256 AMKLMTALVDVALLVSNNFDNAAKQFEAERVKSRDRRASDRLDSLMTKRSELEENMDEIKSMLTY 320
            .::|:|:.:.||..:.:..:...:|..||   |:.|....|:|||..:.|...|.:..::.|:..
plant   208 GLQLVTSFISVANTLGSQRETTQRQLNAE---SKKRADGPRVDSLNKRLSVTHEQITTLEDMMRK 269

  Fly   321 MFKSVFVHRYRDSLPDIRAICMAEIGIWMENYPQNFLDDSYLKYIGWTLHDKIGEVRLRCLQSLL 385
            :|..:|||||||...|||..|:..:|||:.:||..||.|.||||:||||:||...||...|.:|.
plant   270 IFTGLFVHRYRDIDNDIRMSCIQSLGIWILSYPSLFLQDLYLKYLGWTLNDKNAGVRKASLLALQ 334

  Fly   386 PLYEKDELKGKLELFTSKFKDRIVAMTLDKEFEVSVHAVKLVISILKIHPEILADKDCEIVYELV 450
            .|||.||....|.|||.:|.:|::.|..|.:...:|.|:.||..:|: | :::.|.|...:|:|:
plant   335 KLYEMDENVPTLGLFTQRFSNRMIEMADDVDMSAAVCAIGLVKQLLR-H-QLIPDDDLGPLYDLL 397

  Fly   451 YSSHRGVAQAAAEFLNVRLFHLTADM-----------EETKTKRGKVRMPNTPLVRDLVQFFIES 504
            ....:.:.:|..|.:   ..||.|..           :::.::....||     ::.|.:|..:.
plant   398 IDQPQEIRRAIGELV---YDHLIAQKFNSSPSSLTGHDDSSSEIHIFRM-----LQILREFSTDP 454

  Fly   505 ELHEHGAYLVDSFIDSNDMVRDWECMTDLLLEEPGPNEEVLDNKQESTLIEIMVSSVKQSATGEV 569
            .|   ..|::|...:....::||:|:..:||:: .|......::..:.||.::..|::: |.||.
plant   455 IL---CVYVIDDVWEYMKAMKDWKCIISMLLDQ-NPRTGSTTDEDSTNLIRLLFVSIRK-AVGEK 514

  Fly   570 PVGRASNRKCTLSAKELKAIQDEKAKLTEHFIVTLPSLLEKYQADSEKLANLLAVPQYFDLNLYT 634
            .:....|||...|..:.:..::.:..:|...:...|.||.|:.||..|:::|:.:..:..|.||:
plant   515 IIPSTDNRKQYHSKAQREIFENNRKDITVAMMKNYPQLLRKFMADKAKVSSLVEIIIFMKLELYS 579

  Fly   635 TNRQEGNLQALLDRINQVMSMHTGREVLETCAKTLECLCAEGSATYTRCNIARSNIIESAVNKYK 699
            ..|||.:.:|.:..|......|..:|.|.:|.|.: ..||..|         :..:.:.:..|.|
plant   580 LKRQEQSFKAAVRLIKDAFFKHGEKEALRSCVKAI-TFCASES---------KGELQDFSRGKLK 634

  Fly   700 DAIEEWRNLIQG--EETPNEDDIYNITITLKVLSILYSSHNLNPWELFKSLFQDVEEAQSKENID 762
            |..:|..:.|..  .|..:.:|.|::.:.||.|..|..|..:    |.:|:|.::  |.:..|. 
plant   635 DLEDELLDKITSAIREVKDGNDEYSLLVNLKRLYELQLSKPV----LVESMFDEI--ALTLHNF- 692

  Fly   763 RCLPNEALVYCIEACYFSISWGLQYVENECESV---NVTEVVAE---LRNNLDTFMGACFELTRD 821
            |.|..|.:.:.:...:..::|.|..:.| ||::   :::.::::   |...|..|:....|..:.
plant   693 RNLDEEVICFLLLNMHMYLAWYLHSIIN-CEAISEASLSSLISKRDTLFEELSYFLNGIEESKKY 756

  Fly   822 GPTVQIQEAAYQSICDLL----IIF------SDKLARSEIEHIRGLEYKSRMDEHLILDNF---- 872
            |..:.      ..||.:|    .:|      |.||.|        |.|   ..:.:.|:.|    
plant   757 GNQLS------NRICAILAETWCLFRKSNYDSGKLER--------LGY---CPDSVFLEKFWKLC 804

  Fly   873 VQHYVFSLKQDVAQDETR--IEELHKKRNFLACYCKLVVYNIIPTMRAASIFKYYVKCYNDY-GD 934
            .:.:..|.:.| .:||.:  |||.::..:.:|. ||||..:::|               .|| |.
plant   805 AEMFNTSDETD-EEDENKEYIEETNRDVSVIAA-CKLVASDVVP---------------KDYLGP 852

  Fly   935 IIKATLG-------------------KAREINKVNFAMTLLLSLITVFKSLQEQSEDGIVSKSSQ 980
            .|.:.||                   |..:|:.: :..:|..:.......|....|:..|.|..:
plant   853 EIISHLGMHGPGVTGIIKNLITFLRKKEDDISNI-YLESLKRAYHRYSSELSSGREESRVDKCLE 916

  Fly   981 EFVDLKELAKRFA-LTFGFDAIKNRESVAAIHRGGIYFAANKEPDDPVRAPTRLLFLEV-LNEFN 1043
            |:   :|||...: :..|....|.|..:.::.:.|:.||...       ||.:|||||| :..|.
plant   917 EW---RELAGGLSGMYIGAARNKYRLEILSVVKEGVEFAFRD-------APKQLLFLEVAILPFA 971

  Fly  1044 YKLLKQD----KKVIMSFLDKIIPPAMPSSRAEEWQPLILY---------RNSLLHGETDQAPV- 1094
            .:|...|    ||.:...:..:.....||.    |:|...:         :|..|..:.:.|.| 
plant   972 TRLSVSDIIDIKKDVQGRIVHVNTDEDPSG----WRPCFTFLETLEEKCLKNEDLQDDKEAANVR 1032

  Fly  1095 ----ASKRAYTRKRRDHDEEEEEEEDE--------EEHNDPD 1124
                ..||..|.::|..||:...:|||        |:..|.|
plant  1033 RRGRPRKRPETERKRLFDEQSGSDEDESISGGSDREDKLDED 1074

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SA1NP_477268.2 IRR1 66..>426 CDD:227824 107/368 (29%)
STAG 190..303 CDD:462502 31/112 (28%)
SCC3NP_566119.1 IRR1 87..>482 CDD:227824 122/419 (29%)
STAG 143..252 CDD:462502 33/117 (28%)

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