DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SA and stag1

DIOPT Version :9

Sequence 1:NP_477268.2 Gene:SA / 33974 FlyBaseID:FBgn0020616 Length:1127 Species:Drosophila melanogaster
Sequence 2:NP_001121432.1 Gene:stag1 / 100158523 XenbaseID:XB-GENE-1006155 Length:1265 Species:Xenopus tropicalis


Alignment Length:1190 Identity:524/1190 - (44%)
Similarity:727/1190 - (61%) Gaps:121/1190 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 MDDPPPDYEELHSDALNESTSDADSPTKRMTRLRARG----GVRDKPPIIDDDEDDFFAPIARKR 72
            :.|...:...:|:|....||   |..|:.:..|..:|    |...:||          :.|.:.|
 Frog     9 LQDSTNETAVVHTDMSAVST---DMSTELVEDLEVKGKRKRGRPGRPP----------SAIKKPR 60

  Fly    73 KTPATRKGPTERKERVERPRKEPVDKGHHERIDSEREITTDENSLYYIVRHSKNPIASIVDQWIE 137
            ||||.|    .|.|...|.|...  .||.::......:|     |:.:|:..|:.:.|:||.|||
 Frog    61 KTPADR----SRAETGSRGRGRA--NGHPQQNGEGDPVT-----LFEVVKMGKSAMQSVVDDWIE 114

  Fly   138 QYKANRETALVALMQFFINASGCKGKISEDIQYPVDHTSIIRRMTEEFDEESGEYPLIMSGTQWR 202
            .||.:|:.||:.|:.|||..|||||.:..::...:.:..|||:|||||||:||:|||.|.|..|:
 Frog   115 SYKQDRDIALLDLINFFIQCSGCKGTVRIEMFRNMQNAEIIRKMTEEFDEDSGDYPLTMPGPHWK 179

  Fly   203 KFKNNFCDFVQTLVKQCQYSIIYDQFLMDNVISLLTGLSDSQVRAFRHTATLAAMKLMTALVDVA 267
            ||:.|||:|:..|::|||||||||:::||.|||||||||||||||||||:||||||||||||:||
 Frog   180 KFRCNFCEFISVLIRQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVA 244

  Fly   268 LLVSNNFDNAAKQFEAERVKSRDRRASDRLDSLMTKRSELEENMDEIKSMLTYMFKSVFVHRYRD 332
            |.:|.:.||..:|:||||.|...:||::||:.|:.||.||:||.|||::|:..:||.:|||||||
 Frog   245 LNLSIHQDNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNSIFKGIFVHRYRD 309

  Fly   333 SLPDIRAICMAEIGIWMENYPQNFLDDSYLKYIGWTLHDKIGEVRLRCLQSLLPLYEKDELKGKL 397
            ::.:|||||:.|||:||:.|...||:||||||:||||||:.|||||:||::|..||...||..||
 Frog   310 AIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTLHDRQGEVRLKCLKALQSLYTNRELFPKL 374

  Fly   398 ELFTSKFKDRIVAMTLDKEFEVSVHAVKLVISILKIHPEILADKDCEIVYELVYSSHRGVAQAAA 462
            ||||::||||||:||||||::|:|.|::||..||....|.|:::|||.||.||||:||.||.||.
 Frog   375 ELFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLILHGSEEALSNEDCENVYHLVYSAHRPVAVAAG 439

  Fly   463 EFLNVRLF--HLTADMEETKTKRGKVRMPNTPLVRDLVQFFIESELHEHGAYLVDSFIDSN-DMV 524
            |||:.:||  | ....||...||.....||..||:.||.||:|||||||.||||||..:|: :::
 Frog   440 EFLHKKLFSRH-DPQAEEALAKRRGRSSPNGNLVKMLVLFFLESELHEHAAYLVDSLWESSQELL 503

  Fly   525 RDWECMTDLLLEEPGPNEEVLDNKQESTLIEIMVSSVKQSATGEVPVGRASNRKCTLSAKELKAI 589
            :||||||:||:|||...|||:..:|||.|||:||.:::|:|....||||.:.:: .|:|||.|..
 Frog   504 KDWECMTELLVEEPMQGEEVMSERQESALIELMVCTIRQAAEAHPPVGRGTGKR-VLTAKERKTQ 567

  Fly   590 QDEKAKLTEHFIVTLPSLLEKYQADSEKLANLLAVPQYFDLNLYTTNRQEGNLQALLDRINQVMS 654
            .|:|.||||||||.||.||.||.||:||:||||.:||||||.||:|.|.|.:|.:||.:|..|:.
 Frog   568 LDDKNKLTEHFIVALPVLLSKYSADAEKVANLLQIPQYFDLELYSTGRMEKHLDSLLKQIRFVVE 632

  Fly   655 MHTGREVLETCAKTLECLCAEGSATYTRCNIARSNIIESAVNKYKDAIEEWRNLIQGEETPNEDD 719
            .|...:|||.|:||...||:|......|..||.|.:|:...:::..|:||   |:|..|..:||:
 Frog   633 KHIESDVLEACSKTYSILCSEEYTIQNRVEIAHSQLIDELADRFSHAVEE---LLQEAEEADEDE 694

  Fly   720 IYNITITLKVLSILYSSHNLNPWELFKSLFQDVEEAQSKENIDRCLPNEALVYCIEACYFSISWG 784
            |||:..:||.|:..:::|:|..||||.|.::.:......|.    :..:.:|..::..::||.|.
 Frog   695 IYNVMASLKRLTCFHNAHDLTKWELFVSCYRLLRAGIEHEG----MMEQIVVQALQCSHYSILWQ 755

  Fly   785 LQYVENECESVNVT------EVVAELRNNLDTFMGACFELTRDGPTVQIQEAAYQSICDLLIIFS 843
            |         |.:|      |.:..||..:.||:..|.:.. ...|..::|.|:..:||||:|||
 Frog   756 L---------VKITEGNPSKEEMLTLRKTVKTFLAVCQQYL-SSVTTTVKEQAFMLLCDLLMIFS 810

  Fly   844 DKLARSEIEHIRGLEYKSRMDEHLILDNFVQHYVF--------SLKQDVAQDETRIEELHKKRNF 900
            .:|.....|::..|.:...:.....|.|||..:||        |::.|...:..:||.|||:||.
 Frog   811 HQLTTGGRENLVLLVFNPDVGLQSELLNFVMDHVFIDQDDENQSMEGDEEDEANKIEALHKRRNL 875

  Fly   901 LACYCKLVVYNIIPTMRAASIFKYYVKCYNDYGDIIKATLGKAREINKVNFAMTLLLSLITVFKS 965
            ||.:|||::|:|:....||.|||:|:|.|||||||||.||.|.|:::|:..|.||:|||..:|..
 Frog   876 LAAFCKLIIYDIVDMHAAADIFKHYMKYYNDYGDIIKETLSKTRQMDKIQCAKTLILSLQQLFNE 940

  Fly   966 L-QEQSEDGIVSKSSQEFVDLKELAKRFALTFGFDAIKNRESVAAIHRGGIYFAAN-KEPDDPVR 1028
            | |||..:  :.::|.....:||||:|||||||.|.||.||:||.:|:.||.||.. :.|.....
 Frog   941 LVQEQGPN--LDRTSAHVSGIKELARRFALTFGLDQIKTREAVATLHKDGIEFAFKYQNPKGQEY 1003

  Fly  1029 APTRLLFLEVLNEFNYKLLKQDKKVIMSFLDKIIPPAMPSSRAEEWQPLILYRNSLLHGETDQ-- 1091
            .|..|.|||||:||:.|||:||||.:.|:|:|.:...|...|.:.|.|||.|||||:.|..:.  
 Frog  1004 PPLNLAFLEVLSEFSSKLLRQDKKTVHSYLEKFLTDQMMERREDVWLPLISYRNSLVTGGDEDRL 1068

  Fly  1092 -----------APVASK--RAYTRKRRDHDEE--------------------------------- 1110
                       :.|.||  |....|:|..:||                                 
 Frog  1069 SVNSGGSNSKGSSVRSKKGRPPLHKKRGIEEESIDNSWVTRNDTMQTPGALTTPQLTSTVLRENP 1133

  Fly  1111 ----EEEEEDEEEH-NDPDY 1125
                |:..|.|.|| ::||:
 Frog  1134 RQLPEQIPEQESEHSSEPDF 1153

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SANP_477268.2 STAG 190..298 CDD:285686 71/107 (66%)
stag1NP_001121432.1 STAG 167..275 CDD:285686 71/107 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 674 1.000 Domainoid score I142
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H21191
Inparanoid 1 1.050 899 1.000 Inparanoid score I379
OMA 1 1.010 - - QHG60131
OrthoDB 1 1.010 - - D167826at2759
OrthoFinder 1 1.000 - - FOG0000572
OrthoInspector 1 1.000 - - otm72282
Panther 1 1.100 - - O PTHR11199
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X570
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1212.080

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