DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ihog and Robo2

DIOPT Version :10

Sequence 1:NP_609085.1 Gene:ihog / 33972 FlyBaseID:FBgn0031872 Length:886 Species:Drosophila melanogaster
Sequence 2:XP_038944599.1 Gene:Robo2 / 84409 RGDID:620167 Length:1625 Species:Rattus norvegicus


Alignment Length:1029 Identity:225/1029 - (21%)
Similarity:341/1029 - (33%) Gaps:307/1029 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 RILRAPESLVAPLGDEVVLECETSLQP-ERFEW---------------SHRSSRSPGAGFKYLKT 102
            ||:..|..::...|:...|.|:...:| ...||               |||.....|:.| :|:.
  Rat    55 RIVEHPSDVIVSKGEPTTLNCKAEGRPTPTIEWYKDGERVETDKDDPRSHRMLLPSGSLF-FLRI 118

  Fly   103 GTAKANVSQEAAISRLRVLVRPDTLGEYRCV--GWFGPLVVTSTIARLELASTSLVDAQESESPL 165
            ...:.:              :||. |.|.||  .:.|..|  |..|.||:|   |:.....::|.
  Rat   119 VHGRRS--------------KPDE-GTYVCVARNYLGEAV--SRNASLEVA---LLRDDFRQNPT 163

  Fly   166 QWRVSAGNSVLWSCGQQVQSNPSAS--WSYYRNGVEIKPEFIG-TNGNLFLSNVSSESSGSYSCQ 227
            ...|:||...:..| |..:.:|..:  |...:..::.|.|.|. ..|.|.:||.....:|.|:|.
  Rat   164 DVVVAAGEPAILEC-QPPRGHPEPTIYWKKDKVRIDEKEERISIRGGKLMISNTRKSDAGMYTCV 227

  Fly   228 ATNPASGERIQLPGSL---------------------------QLQVTPEQ-------------- 251
            .||.. |||...|..|                           |:|..|:.              
  Rat   228 GTNMV-GERDSDPAELTVFERPTFLRRPINQVVLEDEPAEFRCQVQGDPQPTVRWKKDDADLPRG 291

  Fly   252 RSESKSPHLLR--------------------GQ-PSSQEITIR-------------------EGS 276
            |.:.|..:.||                    |: .:|..:|:|                   :|.
  Rat   292 RYDIKDDYTLRIKKAISADEGTYVCIAENRVGKVEASATLTVRVRPVAPPQFVVRPRDQIVAQGR 356

  Fly   277 SLLLLCPGVGSPPPTVVWSSPDVVGAV-------KNKRSKVFGHA-LEISNTRVNDAGTYIC--- 330
            ::...|...|:|.|.|.|........:       .|.|..|.... |.|:|.:.:|||.|||   
  Rat   357 TVTFPCETKGNPQPAVFWQKEGSQNLLFPNQPQQPNSRCSVSPTGDLTITNIQRSDAGYYICQAL 421

  Fly   331 -FQDNGVRPALEHYIKVHVEQPPQIV--RPPWADLTNEGDRLKLECKATGVPTPEIYWLLNGHSS 392
             ...:.:..|......|..::||.|:  .|....|..:|..| |:|||||.|.|.|.||..|.:.
  Rat   422 TVAGSILAKAQLEVTDVLTDRPPPIILQGPINQTLAVDGTAL-LKCKATGEPLPVISWLKEGFTF 485

  Fly   393 ID-DSEAELSN-NFLILHSVLKRHAGYVQCFARNRLGEHSAGTLLQVNPKQIQEPRESGGTHRPK 455
            :. |..|.:.: ..|.:.::.....|...|.|.:..||.|...:|.|.        |||.|....
  Rat   486 LGRDPRATIQDQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT--------ESGATISKN 542

  Fly   456 PNQGSRQKQMYPPTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIP 519
            .:......   ||:.|.||.::..||.|.|. |...| ||...:.::........:|||..::: 
  Rat   543 YDTNDLPG---PPSKPQVTDVTKNSVTLSWQ-PGTPGVLPASAYIIEAFSQSVSNSWQTVANHV- 602

  Fly   520 YGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPEL 584
                       |:...:|..|:|...|.|.:.|:                 .|....||.|:.:.
  Rat   603 -----------KTTLYTVRGLRPNTIYLFMVRAI-----------------NPQGLSDPSPMSDP 639

  Fly   585 LEIEEYS----------------ETAVVLH-------------WSLASDADEHLITGYYAYYRPS 620
            :..::.|                :..|.||             |::  |.....|.||...||.:
  Rat   640 VRTQDISPPAQGVDHRQVQKELGDVTVRLHNPVVLTPTTVQVTWTV--DRQPQFIQGYRVMYRQT 702

  Fly   621 SSAGEYFKATIEGAHA-----RSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQRPKT-S 679
            |  |.......:...|     ||..:..|:....||.|::.:    .:||    ||.....|| .
  Rat   703 S--GLQASTVWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPY----FNEF----QGMDSESKTIR 757

  Fly   680 TTEEPTLQMGDRDT--TTPSHNET---FNMSPMLTGTIGGGAVLILLLISTCFCVCRRRNSRSRG 739
            ||||.........|  |..|||.|   .:..|.......|     ::.....:|:         |
  Rat   758 TTEEAPSAPPQSVTVLTVGSHNSTSISVSWDPPPADHQNG-----IIQEYKIWCL---------G 808

  Fly   740 NNP----NKPRMAELRDDFVPLGNCSPTKQ------RQRTRHIHITLNP----LAQQQQQALEEK 790
            |..    ||...|.:|.  |.:|...|..|      ...:..:.:...|    :..:.:..:.|.
  Rat   809 NETRFHINKTVDATIRS--VVIGGLFPGIQYRVEVAASTSAGVGVKSEPQPIIIGGRNEVVITEN 871

  Fly   791 ND--TDQDAPYYQRP-----------------SSYDYDPTLRRMSSSSLRRSQRTLERAGG---S 833
            |:  |:|.....::|                 |.:.|   .||.....|.....|.:|..|   |
  Rat   872 NNSITEQITDVVKQPAFIAGIGGACWVILMGFSIWLY---WRRKKRKGLSNYAVTFQRGDGGLMS 933

  Fly   834 NGSNNGNNNNLNQSAEAGSIENPGKPGRVLM--KRPRLSSRSENLSSGSLNSVG 885
            |||..|             :.|.|.|....:  ..|..|....|.:||. |.:|
  Rat   934 NGSRPG-------------LLNTGDPSYPWLADSWPATSLPVNNSNSGP-NEIG 973

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ihogNP_609085.1 Ig 266..348 CDD:472250 24/112 (21%)
Ig strand B 278..282 CDD:409353 0/3 (0%)
Ig strand C 291..295 CDD:409353 1/3 (33%)
Ig strand E 313..317 CDD:409353 1/4 (25%)
Ig strand F 327..332 CDD:409353 3/8 (38%)
Ig strand G 341..344 CDD:409353 0/2 (0%)
Ig 352..437 CDD:472250 28/88 (32%)
Ig strand B 369..373 CDD:409353 2/3 (67%)
Ig strand C 382..386 CDD:409353 1/3 (33%)
Ig strand E 404..407 CDD:409353 1/2 (50%)
Ig strand F 417..422 CDD:409353 1/4 (25%)
Ig strand G 430..433 CDD:409353 1/2 (50%)
FN3 467..565 CDD:238020 23/98 (23%)
FN3 582..>655 CDD:238020 20/106 (19%)
Robo2XP_038944599.1 IgC_1_Robo 54..152 CDD:409490 27/114 (24%)
Ig strand A 54..58 CDD:409490 2/2 (100%)
Ig strand A' 61..66 CDD:409490 0/4 (0%)
Ig strand B 70..78 CDD:409490 2/7 (29%)
Ig strand C 84..89 CDD:409490 2/4 (50%)
Ig strand C' 92..94 CDD:409490 0/1 (0%)
Ig strand D 105..108 CDD:409490 1/2 (50%)
Ig strand E 111..117 CDD:409490 2/6 (33%)
Ig strand F 129..137 CDD:409490 4/7 (57%)
Ig strand G 140..152 CDD:409490 6/13 (46%)
Ig 159..244 CDD:472250 25/86 (29%)
Ig strand B 173..177 CDD:409353 0/3 (0%)
Ig strand C 187..191 CDD:409353 0/3 (0%)
Ig strand E 209..213 CDD:409353 2/3 (67%)
Ig strand F 223..228 CDD:409353 2/4 (50%)
Ig strand G 237..240 CDD:409353 0/2 (0%)
Ig 251..333 CDD:472250 9/81 (11%)
Ig strand B 265..269 CDD:409353 0/3 (0%)
Ig strand C 278..282 CDD:409353 0/3 (0%)
Ig strand E 299..303 CDD:409353 1/3 (33%)
Ig strand F 313..318 CDD:409353 0/4 (0%)
Ig strand G 326..329 CDD:409353 0/2 (0%)
IgI_4_Robo 342..439 CDD:409391 20/96 (21%)
Ig strand A 342..346 CDD:409391 0/3 (0%)
Ig strand A' 348..352 CDD:409391 0/3 (0%)
Ig strand B 358..366 CDD:409391 1/7 (14%)
Ig strand C 369..376 CDD:409391 3/6 (50%)
Ig strand C' 378..381 CDD:409391 0/2 (0%)
Ig strand D 394..399 CDD:409391 2/4 (50%)
Ig strand E 401..408 CDD:409391 2/6 (33%)
Ig strand F 414..423 CDD:409391 4/8 (50%)
Ig strand G 425..436 CDD:409391 1/10 (10%)
IgI_5_Robo 446..532 CDD:409544 27/86 (31%)
Ig strand A 446..449 CDD:409544 1/2 (50%)
Ig strand A' 453..456 CDD:409544 0/2 (0%)
Ig strand B 462..469 CDD:409544 4/7 (57%)
Ig strand C 475..480 CDD:409544 2/4 (50%)
Ig strand C' 482..484 CDD:409544 1/1 (100%)
Ig strand D 491..495 CDD:409544 1/3 (33%)
Ig strand E 498..503 CDD:409544 1/4 (25%)
FN3 <510..882 CDD:442628 93/440 (21%)
Ig strand F 511..519 CDD:409544 3/7 (43%)
Ig strand G 522..532 CDD:409544 4/9 (44%)
FN3 549..642 CDD:238020 27/125 (22%)

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