DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ihog and rig-4

DIOPT Version :10

Sequence 1:NP_609085.1 Gene:ihog / 33972 FlyBaseID:FBgn0031872 Length:886 Species:Drosophila melanogaster
Sequence 2:NP_501339.2 Gene:rig-4 / 177597 WormBaseID:WBGene00004371 Length:2325 Species:Caenorhabditis elegans


Alignment Length:879 Identity:178/879 - (20%)
Similarity:289/879 - (32%) Gaps:317/879 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 ESLVAPLGDEVVLECETSLQPERFEWSHRSSRSPG---AGFKYLKTGTAKANVSQEAAISRLRVL 121
            |..||..|:.:.|:|:.:...|::||  |...:.|   |..|:.:...::.|..:          
 Worm    38 EQKVAVEGEIIRLKCDDAELAEQYEW--RIGDASGELIATSKFCEVQASRVNDEK---------- 90

  Fly   122 VRPDTLGEYRCV--GWFGPLVVTSTIARLELASTSLVDAQESESPLQWRVSAGNS---VLWSCGQ 181
                   :||||  ...|..:...::.|    |..|.|...|:..:|:.|:.|..   ||.....
 Worm    91 -------KYRCVARNTVGAAISPPSMVR----SKYLDDFDASDESVQYEVTTGVGRYFVLRRPTL 144

  Fly   182 QVQSNPSASWSYYR-NGVEIKPE---FIGTNGNLFLSNVSSESSGSYSCQATNPASGERI----- 237
            ....|...|:|:.: :..::.|:   |:.::|||.::.|..:..|:|...|::....|.:     
 Worm   145 LASRNLDISYSWIKDDSHQVTPDATHFVTSDGNLVVTGVKRDDFGAYKLMASSDDLKEIVSKEYN 209

  Fly   238 --------QLPGSLQLQVTPEQRS--ESKSPH--------------------LLRGQ-------- 264
                    .|..:|.:...|..|:  ||..||                    .|.||        
 Worm   210 VRDNGLSPSLQNTLSIVYFPTDRTIIESTLPHDEIFDCVTSFGSKDDVRIRWFLNGQQISGSEVG 274

  Fly   265 --------------PSS---------------------------------------QEITIREGS 276
                          |||                                       .||....||
 Worm   275 MTTTLNNRRLIISNPSSFTRGEHKLECRADAAMGRTSDQKSAYMTFISRPILKDLPNEIQKTVGS 339

  Fly   277 SLLLLCPGVGSPPPTVVWSSPDVVGAVKNKRSKVFGHALEISNTRVNDAGTYICFQDNGVRPALE 341
            ||.|.|.........:.|....::  :..:|.|     |.|...:.:|.|.|.|...|.....|.
 Worm   340 SLSLKCSVKKKSSMDIKWYKNGLM--MTTQRGK-----LTIDRIKQDDFGLYQCEATNAAGADLA 397

  Fly   342 H-YIK----------------------VHVEQPP---------------------------QIVR 356
            . ::|                      :.:|.||                           ::::
 Worm   398 SVWVKEGEANETVATEMSEDGMSLEEEISMETPPPRKLKFFDNSKSQEQLFPFTSELEPSQKLIK 462

  Fly   357 PPWADLT--NEGDRLKLECKATGVPTPEIYWLLNGHS-SIDDSEAELSNNFLILHSVLKRHAGYV 418
            .| .|||  :..||:.:||.|||.|.|.|.||||||. ..|:.:.:|:|:.|.:|.:.|...|..
 Worm   463 TP-KDLTVASGTDRIMMECAATGSPPPNIIWLLNGHEIQTDNVKYDLTNDGLAIHDIRKSDEGEY 526

  Fly   419 QC---------------------------------------------FARN-------------- 424
            .|                                             :.|.              
 Worm   527 TCEISGSNVKATANVQVNGDSLIEYGPADQKSLIGTNVEFSCEVAKEYVRKASVEWYLNDVLLPV 591

  Fly   425 ------RLGEHSAGTLL--QVNPKQIQEPRESGGTHRPKPNQGSRQKQM--------YPPTPPNV 473
                  |:..:..|:|:  ||.|       ::.|.:|.:.....|::..        .|..|..|
 Worm   592 NGNSGLRISRNRKGSLIIRQVGP-------DNTGEYRCRVTVDGREENASAMLQIIEKPAMPERV 649

  Fly   474 -TRLSDES----VMLRWMVPRNDGL----PIVIFKVQYRMVGKR---KNWQTTNDNIP--YGKP- 523
             ..|.:|:    |.:||    |:|.    ||:...::.|.:|..   .:|.|..||||  .||| 
 Worm   650 RAELHNETMPAKVRVRW----NEGFDGNEPIIKHAIEMRTMGPTGLWSDWTTAIDNIPKEEGKPC 710

  Fly   524 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKES--NTSAKFYLQPGAALDPMPVPELLE 586
            .|         ..:.||:|..|..||::|...:...|.|  :.|.....||     |...|..:.
 Worm   711 CW---------TDIEDLRPSSTAEFRVVASNKHGPGKPSLPSYSVTMPQQP-----PSAAPRNVA 761

  Fly   587 IEEYSETAVVLHWSL-ASDADEHLITGYYAYYRPSS-SAGEYFKATIEGAHARSFKIAPLETATM 649
            ....|..:|::.|.. ..:.|...:.||...||.:. |:..:.:..:....||:..:..|.|...
 Worm   762 ASARSPHSVMVQWQQPKEELDSGDVLGYVVRYRLAGYSSLTWNEKNLTTKDARNTLVDELITWRE 826

  Fly   650 YEFKLQSFSAASASEFS-----ALKQGR-TQRPK 677
            ||.::.:::......||     ...:|| ||.||
 Worm   827 YEIQVAAYNKRGLGVFSESIEVTTSEGRPTQAPK 860

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ihogNP_609085.1 Ig 266..348 CDD:472250 22/143 (15%)
Ig strand B 278..282 CDD:409353 2/3 (67%)
Ig strand C 291..295 CDD:409353 0/3 (0%)
Ig strand E 313..317 CDD:409353 1/3 (33%)
Ig strand F 327..332 CDD:409353 2/4 (50%)
Ig strand G 341..344 CDD:409353 0/3 (0%)
Ig 352..437 CDD:472250 33/181 (18%)
Ig strand B 369..373 CDD:409353 0/3 (0%)
Ig strand C 382..386 CDD:409353 1/3 (33%)
Ig strand E 404..407 CDD:409353 1/2 (50%)
Ig strand F 417..422 CDD:409353 1/49 (2%)
Ig strand G 430..433 CDD:409353 0/2 (0%)
FN3 467..565 CDD:238020 33/114 (29%)
FN3 582..>655 CDD:238020 16/74 (22%)
rig-4NP_501339.2 IG_like 330..402 CDD:214653 19/78 (24%)
Ig strand B 341..345 CDD:409568 2/3 (67%)
Ig strand C 354..358 CDD:409568 0/3 (0%)
Ig strand E 369..373 CDD:409568 2/8 (25%)
Ig strand F 383..388 CDD:409568 2/4 (50%)
Ig strand G 396..399 CDD:409568 1/2 (50%)
Ig 459..543 CDD:472250 28/84 (33%)
Ig strand B 476..480 CDD:409353 0/3 (0%)
Ig strand C 489..493 CDD:409353 1/3 (33%)
Ig strand E 511..515 CDD:409353 1/3 (33%)
Ig strand F 525..530 CDD:409353 1/4 (25%)
Ig strand G 536..539 CDD:409353 0/2 (0%)
IG_like 553..639 CDD:214653 10/92 (11%)
Ig strand B 564..568 CDD:409353 0/3 (0%)
Ig strand C 579..583 CDD:409353 0/3 (0%)
Ig strand E 605..609 CDD:409353 2/3 (67%)
FN3 <614..>874 CDD:442628 65/272 (24%)
Ig strand F 619..624 CDD:409353 1/4 (25%)
FN3 756..850 CDD:238020 18/93 (19%)
FN3 858..954 CDD:238020 2/3 (67%)
fn3 965..1042 CDD:394996
FN3 1057..1151 CDD:238020
FN3 1156..1251 CDD:238020
FN3 <1218..>1470 CDD:442628
FN3 1464..1560 CDD:238020
FN3 1572..1664 CDD:238020
FN3 <1645..>1896 CDD:442628
FN3 1774..1858 CDD:238020
Blue background indicates that the domain is not in the aligned region.

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