DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb27C and HRB1

DIOPT Version :10

Sequence 1:NP_476869.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_014394.2 Gene:HRB1 / 855728 SGDID:S000004949 Length:454 Species:Saccharomyces cerevisiae


Alignment Length:213 Identity:50/213 - (23%)
Similarity:92/213 - (43%) Gaps:36/213 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ--NGPHT 71
            :|||.|::::|.|:|:.:|.:.|.::...::.:.  |..||.|.|.|.:..:|:..::  :|...
Yeast   163 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTNSDDVDRAIRQYDGAFF 225

  Fly    72 LDG----RTIDPKPCNPRTLQKPKKGG-------GYKVFLGGLPSNVTETDLRTFFNRYGKVTEV 125
            :|.    |..:|.|.|....:|....|       .::|.:..||::|....|:..|...|.|...
Yeast   226 MDRKIFVRQDNPPPSNNIKERKALDRGELRHNRKTHEVIVKNLPASVNWQALKDIFKECGNVAHA 290

  Fly   126 VIMYDQEKKKSRGFGFLSFEEESSVEHVTNERY--INLNGKQVEIKKAE-------------PRD 175
            .:..|.: ..|.|.|.:||.:...: |...|:|  .::.|..:::|..|             |.|
Yeast   291 DVELDGD-GVSTGSGTVSFYDIKDL-HRAIEKYNGYSIEGNVLDVKSKESVHNHSDGDDVDIPMD 353

  Fly   176 GS----GGQNSNNSTVGG 189
            .|    ..:....:.|||
Yeast   354 DSPVNEEARKFTENVVGG 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb27CNP_476869.1 RRM1_hnRNPA_hnRNPD_like 9..80 CDD:409763 19/76 (25%)
RRM2_DAZAP1 94..173 CDD:409765 21/100 (21%)
HRB1NP_014394.2 PRK12678 <29..>85 CDD:237171
RRM1_HRB1_GBP2 160..236 CDD:410184 19/74 (26%)
RRM2_HRB1_GBP2 262..334 CDD:410185 18/73 (25%)
RRM3_HRB1_GBP2 374..452 CDD:410186
Blue background indicates that the domain is not in the aligned region.

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