DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hrb27C and CSTF64

DIOPT Version :10

Sequence 1:NP_476869.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_177325.2 Gene:CSTF64 / 843510 AraportID:AT1G71800 Length:461 Species:Arabidopsis thaliana


Alignment Length:155 Identity:41/155 - (26%)
Similarity:69/155 - (44%) Gaps:26/155 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 VFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSF-EEESSVEHVTNERYINL 161
            ||:|.:|.:.||..||......|.|....::.|:|..|.:|:||..: :||:::....|.:...:
plant    11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQSYEI 75

  Fly   162 NGKQVEIKKAE-------PRDGS-GGQN-SNNSTVGGAYGKLGNECSHWGP----HHAPINMMQG 213
            ||:|:.:..||       .||.| ||.. .:.:||..:..::|      ||    .|.|:.:...
plant    76 NGRQLRVDFAENDKGTDKTRDQSQGGPGLPSTTTVTESQKQIG------GPVDSNMHQPVGLHLA 134

  Fly   214 QN------GQMGGPPLNMPIGAPNM 232
            ..      |.:|||.:.......|:
plant   135 TTAASVIAGALGGPQVGSQFTQSNL 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb27CNP_476869.1 RRM1_hnRNPA_hnRNPD_like 9..80 CDD:409763
RRM2_DAZAP1 94..173 CDD:409765 24/82 (29%)
CSTF64NP_177325.2 RRM_CSTF2_RNA15_like 9..85 CDD:409832 22/73 (30%)
SF-CC1 <11..212 CDD:273721 41/155 (26%)
CSTF_C 419..454 CDD:464130
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.