DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb27C and UBP1A

DIOPT Version :10

Sequence 1:NP_476869.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_849806.1 Gene:UBP1A / 841846 AraportID:AT1G54080 Length:430 Species:Arabidopsis thaliana


Alignment Length:380 Identity:83/380 - (21%)
Similarity:132/380 - (34%) Gaps:98/380 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLD 73
            ::.|.:..:.|:..|...|...|.|..|.:::.::|    .:|||.:.|....:..:.    ||:
plant    65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS----SYGFVHYFDRRCASMAIM----TLN 121

  Fly    74 GRTIDPKPCNPR----TLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVT----EVVIMYD 130
            ||.|..:|....    |.|:......:.:|:|.|...||:..|...|:.:...:    :..:|:|
plant   122 GRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWD 186

  Fly   131 QEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNSNNSTVGGAYGKLG 195
            |:..:||||||:||..:...:...||    :|||.|..::.         ..|.:|.|..:|   
plant   187 QKTGRSRGFGFVSFRNQQDAQTAINE----MNGKWVSSRQI---------RCNWATKGATFG--- 235

  Fly   196 NECSHWGPHHAPINMMQGQNGQMGGPPL---NMPIGAPNMMPGYQGWGTSPQQQQ---------- 247
             |..|.....:.:.:..|.:..  |..|   :.|...|.....|.| ..||:..|          
plant   236 -EDKHSSDGKSVVELTNGSSED--GRELSNEDAPENNPQFTTVYVG-NLSPEVTQLDLHRLFYTL 296

  Fly   248 ---------------YGY---------------GNSGPGSYQ-----GWGAPPGPQG------PP 271
                           :|:               ||:.|..:.     .||..|.|.|      ||
plant   297 GAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPTPSGTASNPLPP 361

  Fly   272 PQWSNYAGPQQTQGYGGYDM--YNSTSTGAPSGPSGGGSWNSWNMPPNSAGPTGA 324
            |      .|.........|:  |......|...|....|.....:..|.||.|.|
plant   362 P------APASVPSLSAMDLLAYERQLALAKMHPQAQHSLRQAGLGVNVAGGTAA 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb27CNP_476869.1 RRM1_hnRNPA_hnRNPD_like 9..80 CDD:409763 17/70 (24%)
RRM2_DAZAP1 94..173 CDD:409765 24/82 (29%)
UBP1ANP_849806.1 RRM1_PUB1 65..135 CDD:410026 18/77 (23%)
RRM2_PUB1 147..230 CDD:410031 25/95 (26%)
RRM_SF 273..349 CDD:473069 11/76 (14%)

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