DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hrb27C and AT5G55550

DIOPT Version :9

Sequence 1:NP_001162897.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_001331843.1 Gene:AT5G55550 / 835649 AraportID:AT5G55550 Length:507 Species:Arabidopsis thaliana


Alignment Length:516 Identity:141/516 - (27%)
Similarity:215/516 - (41%) Gaps:147/516 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
            |.:.||||:||:||:|.:|.|..||..:||:::.|:|::..:||:|||||:.||||.....|:.:
plant     2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66

  Fly    68 GPHTLDGRT-----------------------------------------------IDPKPCNPR 85
             .|.:||||                                               ::.|...||
plant    67 -KHIIDGRTVCDFNHFSIFQQNKQSSDLIATSSICVFESSLNLCFSKCKDQIYVLQVEAKKAVPR 130

  Fly    86 T-------------LQKPKKGGG---YKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKK 134
            .             |..|..|||   .|:|:|||||::||.:.:.:|:::|.:.:||:|||...:
plant   131 DDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQ 195

  Fly   135 KSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGS----------------GGQNS- 182
            :.|||||::|:.:.:|:.|.::.:..||||.||:|:|.|::.|                ||.|. 
plant   196 RPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRM 260

  Fly   183 ------NNSTVG-GAYGKLGNECSHWGPHHAPINMMQGQNGQMG-GPPLNMPIGAPNMMPGYQGW 239
                  ||...| |.|..||..    |...:|: :..|:|.... |..||..:.. |:.|...|.
plant   261 PANSYFNNFAPGPGFYNSLGPV----GRRFSPV-IGSGRNAVSAFGLGLNHDLSL-NLNPSCDGT 319

  Fly   240 GTSPQQQQYGYGNSGPGSYQGWGAPPGPQGPPPQWSNYAGPQQTQGYGGYDMY-NSTSTGAPS-- 301
            .::     :|| |..|.:....||.|.....|...:....|..:   ...|:: |.|.|..|.  
plant   320 SST-----FGY-NRIPSNPYFNGASPNRYTSPIGHNRTESPYNS---NNRDLWGNRTDTAGPGWN 375

  Fly   302 -GPSGGGSWNSWNMPPNSAGPTGAPGAGAGTATDMYSRAQAWATGGPSTT------GPVGGMPRT 359
             ..|.|.:..:|.:|.:||......|.|....|          :.|.|::      |.:|.:.|.
plant   376 LNVSNGNNRGNWGLPSSSAVSNDNNGFGRNYGT----------SSGLSSSPFNGFEGSIGELYRG 430

  Fly   360 GPGNS---------ASKSGSEYDYGGYGSGYDYDYSNYVKQEGASNYGAGPRSAYGNDSST 411
            |...|         .|:|..|.|......|||.|           |.|:.|.:   ||..|
plant   431 GSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDID-----------NVGSDPSA---NDPET 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb27CNP_001162897.1 RRM1_DAZAP1 8..89 CDD:241018 37/140 (26%)
RRM2_DAZAP1 94..173 CDD:240773 34/81 (42%)
AT5G55550NP_001331843.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 1.000 Domainoid score I2908
eggNOG 1 0.900 - - E1_KOG4205
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1565323at2759
OrthoFinder 1 1.000 - - FOG0000417
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X310
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.780

Return to query results.
Submit another query.