DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb27C and AT4G14300

DIOPT Version :9

Sequence 1:NP_001162897.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_001328758.1 Gene:AT4G14300 / 827071 AraportID:AT4G14300 Length:411 Species:Arabidopsis thaliana


Alignment Length:452 Identity:151/452 - (33%)
Similarity:215/452 - (47%) Gaps:99/452 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
            :.::|||||||:||||.::.|..:|..:|::...:||::..:||.||||||.|:||:.::.|||.
plant     2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66

  Fly    68 GPHTLDGRTIDPKPCNPR----------TLQKPKKGGG------YKVFLGGLPSNVTETDLRTFF 116
             .|::|.|.:|.|....|          .|...:..||      .|:|:||||..:|:.:.|.:|
plant    67 -KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYF 130

  Fly   117 NRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRD---GSG 178
            ..||.||:|.|||||...:.|||||:||:.|.:|:.|.::.:.:|:|||||:|:|.|:|   |.|
plant   131 EVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGG 195

  Fly   179 GQNSNNSTVGGAYGKLGNECSHWGPHHAPINMMQGQNGQMGGPPLNMPIGAPNMMPGY--QGWGT 241
            |::......||..|..|||.|:              :|:|............|.:|.|  .|:|.
plant   196 GRSMGGGGSGGYQGYGGNESSY--------------DGRMDSNRFLQHQSVGNGLPSYGSSGYGA 246

  Fly   242 SPQQQQYGYGN----SGPGSYQGWGAPPGPQGPPPQWSNYAGPQQTQGYGGYDM----YNSTSTG 298
                   ||||    :|.|:|.|:....|..|        ||  .|.|||..::    |.|::..
plant   247 -------GYGNGSNGAGYGAYGGYTGSAGGYG--------AG--ATAGYGATNIPGAGYGSSTGV 294

  Fly   299 APSGPSGGGSWNSWNMPPNSAGPTGAPGAGAGTATDMYSRAQAWATGGPSTTGPVGGMPRTGPGN 363
            ||.        |||:.|.:|.  .|.||.|:|.|...|              |..|..|.|...:
plant   295 APR--------NSWDTPASSG--YGNPGYGSGAAHSGY--------------GVPGAAPPTQSPS 335

  Fly   364 SASKSGSEYDYGGYGSGYDYDYSNYV---------KQEGASNYGAG--PRSAYGNDSSTQPP 414
            ..|..|  |.|||| ||.|..|.|..         ...|::|.|:|  ....||:.|....|
plant   336 GYSNQG--YGYGGY-SGSDSGYGNQAAYGVVGGRPSGGGSNNPGSGGYMGGGYGDGSWRSDP 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb27CNP_001162897.1 RRM1_DAZAP1 8..89 CDD:241018 36/90 (40%)
RRM2_DAZAP1 94..173 CDD:240773 39/84 (46%)
AT4G14300NP_001328758.1 RRM1_hnRNPA_hnRNPD_like 8..78 CDD:409763 32/70 (46%)
RRM2_Hrp1p 111..188 CDD:409767 37/76 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 1.000 Domainoid score I2908
eggNOG 1 0.900 - - E1_KOG4205
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 210 1.000 Inparanoid score I1255
OMA 1 1.010 - - QHG54563
OrthoDB 1 1.010 - - D1565323at2759
OrthoFinder 1 1.000 - - FOG0000417
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X310
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.840

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