DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb27C and AT2G33410

DIOPT Version :9

Sequence 1:NP_001162897.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_180899.1 Gene:AT2G33410 / 817905 AraportID:AT2G33410 Length:404 Species:Arabidopsis thaliana


Alignment Length:464 Identity:159/464 - (34%)
Similarity:210/464 - (45%) Gaps:117/464 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
            |.::||||:||:||:|.:..|..||..||:::...||:...:||.||||||.|:||..::.|||:
plant     2 ESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66

  Fly    68 GPHTLDGRTIDPKPCNPRTLQKPKKGGG----------------YKVFLGGLPSNVTETDLRTFF 116
             .|.:|.|.:|.|....|..|.|....|                .|:|:||||..:|..:.|.:|
plant    67 -KHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYF 130

  Fly   117 NRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGS---- 177
            ..||.|::.|||.||..::.|||||:||:.|.||:.|.::.:.:|||||||:|:|.|:|.:    
plant   131 ETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKDANPGIA 195

  Fly   178 --GGQNSNNSTVGGAYGKLGNECSHWGPHHAPIN---MMQGQNGQMGGPPLNMPIGAPNMMPGYQ 237
              ||:.|     |||.|..|...|....:...::   .||.||...|.||.           |..
plant   196 SGGGRGS-----GGAGGFPGYGGSGGSGYEGRVDSNRYMQPQNTGSGYPPY-----------GGS 244

  Fly   238 GWGTSPQQQQYGYGNSGP--GSYQGWGAPPGP-------------QGPPPQWSNYAGPQQTQGYG 287
            |:||.     ||||::|.  |.:.|:|.|.|.             .||...|    |.|...|||
plant   245 GYGTG-----YGYGSNGVGYGGFGGYGNPAGAPYGNPSVPGAGFGSGPRSSW----GAQAPSGYG 300

  Fly   288 --GYDMYNSTSTGAPSGPSGGGSWNSWNMPPNSAGPTGAPGAGAGTATDMYSRAQAWATGG---- 346
              ||      ...||.|.|||         |.|| ..|..||.||..      :|.:..||    
plant   301 NVGY------GNAAPWGGSGG---------PGSA-VMGQAGASAGYG------SQGYGYGGNDSS 343

  Fly   347 ---PSTTGPVGGMPRTGPGNSASKSGSEYDYGGY-----GSGYDYDYSNYVKQEGASNYGAGPRS 403
               ||..|.|||.....|.|...        |||     |||   .|.|:....|.:.||.|   
plant   344 YGTPSAYGAVGGRSGNMPNNHGG--------GGYADALDGSG---GYGNHQGNNGQAGYGGG--- 394

  Fly   404 AYGNDSSTQ 412
             ||:....|
plant   395 -YGSGRQAQ 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb27CNP_001162897.1 RRM1_DAZAP1 8..89 CDD:241018 35/80 (44%)
RRM2_DAZAP1 94..173 CDD:240773 38/94 (40%)
AT2G33410NP_180899.1 RRM_SF 8..78 CDD:418427 32/70 (46%)
RRM2_Hrp1p 111..188 CDD:409767 37/76 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 1.000 Domainoid score I2908
eggNOG 1 0.900 - - E1_KOG4205
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 210 1.000 Inparanoid score I1255
OMA 1 1.010 - - QHG54563
OrthoDB 1 1.010 - - D1565323at2759
OrthoFinder 1 1.000 - - FOG0000417
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X310
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.840

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