DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb27C and Celf3

DIOPT Version :9

Sequence 1:NP_001162897.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_001276542.1 Gene:Celf3 / 78784 MGIID:1926034 Length:494 Species:Mus musculus


Alignment Length:386 Identity:86/386 - (22%)
Similarity:138/386 - (35%) Gaps:88/386 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVL 65
            |:|.:..|||||.:.....:::|...|.:||.|.:..|:|:..:|..:|..|:|:....:.... 
Mouse     1 MKEPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA- 64

  Fly    66 QNGPH---TLDG--RTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEV 125
            |:..|   ||.|  |.|..||.:..:     :|...|:|:|.|....|:.|:|..|..:|.:.|.
Mouse    65 QSALHEQKTLPGMNRPIQVKPADSES-----RGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDEC 124

  Fly   126 VIMYDQEKKKSRGFGFLSF----EEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNSNNST 186
            .::...: ..|:|..|:.|    |.::::..:.:.|.:......:.:|.|:.....|        
Mouse   125 TVLRGPD-GTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERG-------- 180

  Fly   187 VGGAYGKLGNECSHWGPHHAPINMMQGQNGQMG-GPPLNMPIGAPNMMPGYQGWGTSPQQQQYGY 250
                                 :..||....|:| ..|:.:..||      |..:..:..|||...
Mouse   181 ---------------------LRRMQQVATQLGMFSPIALQFGA------YSAYTQALMQQQAAL 218

  Fly   251 GNSGPGSYQGWGAPPGPQGPPPQWSNYAGPQQTQGYGGYDMYNSTSTGA------PSGPSGGGSW 309
                                ....|.|..|..|.  ....|.:..:..|      |..||.|.| 
Mouse   219 --------------------VAAHSAYLSPMATM--AAVQMQHMAAISANGLIATPITPSSGTS- 260

  Fly   310 NSWNMPPNSAGPTGAPGAGAGTATDMYSRAQAWATGGPSTTG--PVGGMPRTGPGNSASKS 368
               ..|..:|.|..|..|..|  .:.||......||.|:...  |.|..|......||.:|
Mouse   261 ---TPPAIAATPVSAIPAALG--VNGYSPVPTQPTGQPAPDALYPNGVHPYPDEALSAERS 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb27CNP_001162897.1 RRM1_DAZAP1 8..89 CDD:241018 25/85 (29%)
RRM2_DAZAP1 94..173 CDD:240773 18/82 (22%)
Celf3NP_001276542.1 RRM1_CELF3_4_5_6 2..88 CDD:410041 26/86 (30%)
RRM2_CELF3_4_5_6 94..174 CDD:410043 17/80 (21%)
PRK12323 <214..379 CDD:237057 30/131 (23%)
RRM3_CELF3_4_5_6 405..483 CDD:241083
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4205
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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