DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb27C and srsf3

DIOPT Version :10

Sequence 1:NP_476869.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster
Sequence 2:XP_012815513.1 Gene:srsf3 / 448605 XenbaseID:XB-GENE-490817 Length:183 Species:Xenopus tropicalis


Alignment Length:90 Identity:24/90 - (26%)
Similarity:39/90 - (43%) Gaps:16/90 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINL 161
            ||::|.|.:|..:|:|...|..||.:..|.:     .:...||.|:.||:.........|    |
 Frog    30 KVYVGNLGNNGNKTELERAFGYYGPLRSVWV-----ARNPPGFAFVEFEDPRDAADAVRE----L 85

  Fly   162 NGK-------QVEIKKAEPRDGSGG 179
            :|:       :||:...|.|..:.|
 Frog    86 DGRTLCGCRVRVELSNGEKRSRNRG 110

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb27CNP_476869.1 RRM1_hnRNPA_hnRNPD_like 9..80 CDD:409763
RRM2_DAZAP1 94..173 CDD:409765 21/82 (26%)
srsf3XP_012815513.1 RRM_SRSF3 25..105 CDD:241089 22/83 (27%)
Blue background indicates that the domain is not in the aligned region.

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