DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb27C and hnrnpa1b

DIOPT Version :10

Sequence 1:NP_476869.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_956398.3 Gene:hnrnpa1b / 378453 ZFINID:ZDB-GENE-030912-14 Length:403 Species:Danio rerio


Alignment Length:444 Identity:135/444 - (30%)
Similarity:192/444 - (43%) Gaps:102/444 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ 66
            |.::..|||:||||:|||.::|..:|.::|.:.||||||:..:.|||||||||::....||..:.
Zfish     9 EPEQLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMD 73

  Fly    67 NGPHTLDGRTIDPKPCNPRTLQKPKKGGGY------KVFLGGLPSNVTETDLRTFFNRYGKVTEV 125
            ..||.:|||.::||    |.:.:......:      |:|:||:..:..|..||.:|:::||:..|
Zfish    74 ARPHKVDGRLVEPK----RAVSREDSSKPFAHTTVKKIFVGGIKDDTEENHLRDYFDQFGKIEVV 134

  Fly   126 VIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKA--------EPRDGSGGQNS 182
            .||.|.:....|||.|::|::..||:.:..::|..:||...|::||        ..|.|.||...
Zfish   135 EIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCEVRKALSKQEMANTGRGGGGGGGG 199

  Fly   183 NNSTVGGAYGKLGNECSHWGPHHAPINMMQGQNGQMGGPPLNMPIGAPNMMPGYQGWGTSPQQQQ 247
            :.    |.:.:.||.              .|.|...||.      |......||.|.|       
Zfish   200 DR----GNFNRYGNN--------------GGYNNDFGGG------GGGGNRDGYFGRG------- 233

  Fly   248 YGYGNSGPGSYQGWGAPPGPQGPPPQWSNYAGPQQTQGY-GGYDMYNSTSTGAPSGPSGGGSWNS 311
             |.||:..|...|.|                      || ||.|.||: :.|...|..|||..|.
Zfish   234 -GRGNNFGGGGGGGG----------------------GYGGGGDCYNN-NNGFGGGGYGGGGGNG 274

  Fly   312 WNMPPNSAGPTGAPGAGAGTATDMYSRAQAWATGGPSTTGPVGGMPRTGPGNSASKSGSEYDYGG 376
            ...|.|..|..|..|.|.|  ...|.. |....||.::.|..||......||.....|   ::||
Zfish   275 GGSPGNYGGNRGYGGGGGG--GHGYGN-QGGGYGGGNSGGGGGGYNNYNNGNGNFGGG---NFGG 333

  Fly   377 YGSG--------------YDYDYSNYVKQEGASNYGAGPRSA------YGNDSS 410
            .|.|              |:...|||...:|  |:|.|.|::      ||..||
Zfish   334 GGGGGNSGGGGNYNDFGNYNSQQSNYGPMKG--NFGGGGRNSGPYGGGYGGGSS 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb27CNP_476869.1 RRM1_hnRNPA_hnRNPD_like 9..80 CDD:409763 34/70 (49%)
RRM2_DAZAP1 94..173 CDD:409765 27/92 (29%)
hnrnpa1bNP_956398.3 None

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