DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb27C and Rsf1

DIOPT Version :10

Sequence 1:NP_476869.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_477001.2 Gene:Rsf1 / 34370 FlyBaseID:FBgn0011305 Length:200 Species:Drosophila melanogaster


Alignment Length:230 Identity:60/230 - (26%)
Similarity:85/230 - (36%) Gaps:69/230 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 GYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYI 159
            |.:|::|.|...|.:.||...|.:|||:..|.|.::..     ||.|:.||.....|...:    
  Fly     9 GTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPP-----GFAFVEFEHRDDAEKACD---- 64

  Fly   160 NLNGKQ-------VEIKKAEPRDGSGGQNSNNSTVGGAYGKLGNECSHWGPHHAPINMMQGQNGQ 217
            .|||.:       |||.|..||.|..|...:.   ||..|..|..           ::..|.:| 
  Fly    65 ILNGSELLGSQLRVEISKGRPRQGRRGGPMDR---GGRRGDFGRH-----------SITSGGSG- 114

  Fly   218 MGGPPLNMPIGAPNMMPGYQ---GWGTSPQQQQYGY--GNSGPGSYQGWGAPPGPQGPPPQWSNY 277
             ||              |::   ..|:|.:..:.||  |.||..||.|            :....
  Fly   115 -GG--------------GFRQRGSSGSSSRHTERGYSSGRSGASSYNG------------REGGG 152

  Fly   278 AGPQQTQGYGG------YDMYNSTSTGAPSGPSGG 306
            :|..:.:.|||      |...:|.|.|...|.|.|
  Fly   153 SGFNRREVYGGGRDSSRYSSGSSASYGRTGGQSAG 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb27CNP_476869.1 RRM1_hnRNPA_hnRNPD_like 9..80 CDD:409763
RRM2_DAZAP1 94..173 CDD:409765 26/84 (31%)
Rsf1NP_477001.2 RRM_SRSF3_like 11..82 CDD:409808 24/79 (30%)
Blue background indicates that the domain is not in the aligned region.

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