DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb27C and HNRNPA1

DIOPT Version :9

Sequence 1:NP_001162897.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_112420.1 Gene:HNRNPA1 / 3178 HGNCID:5031 Length:372 Species:Homo sapiens


Alignment Length:439 Identity:135/439 - (30%)
Similarity:195/439 - (44%) Gaps:114/439 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ 66
            |.::..|||:||||:|||.|:|..:|.::|.:.|||||::..:.|||||||||:|....|:..:.
Human     9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73

  Fly    67 NGPHTLDGRTIDPKPCNPRTLQKPKKGGGY----KVFLGGLPSNVTETDLRTFFNRYGKVTEVVI 127
            ..||.:|||.::||....|  :..::.|.:    |:|:||:..:..|..||.:|.:|||:..:.|
Human    74 ARPHKVDGRVVEPKRAVSR--EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI 136

  Fly   128 MYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKA-------------EPRDGSGG 179
            |.|:...|.|||.|::|::..||:.:..::|..:||...|::||             ..|.|||.
Human   137 MTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGN 201

  Fly   180 QNSNNSTVGGAYGKLGNECSHWGPHHAPINMMQGQN--------GQMGGPPLNMPIGAPNMMPGY 236
            .....   ||.:|  ||:           |..:|.|        |..||.      |......||
Human   202 FGGGR---GGGFG--GND-----------NFGRGGNFSGRGGFGGSRGGG------GYGGSGDGY 244

  Fly   237 QGWGTSPQQQQYGYGNSGP---GSYQGWGAPPGPQGPPPQWSNYAGPQQTQGYGGYDMYNSTSTG 298
            .|:|...     |||..||   |..:|:|:  |.||...|.|.|.|.      |.||.||:...|
Human   245 NGFGNDG-----GYGGGGPGYSGGSRGYGS--GGQGYGNQGSGYGGS------GSYDSYNNGGGG 296

  Fly   299 APSGPS-----GGGSWNSWNMPPNSAGPTGAPGAGAGTATDMYSRAQAWATGGPSTTGPVGGMPR 358
            ...|.|     ||||:|.:....|.:...|....|               ..|..::||.||   
Human   297 GFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGG---------------NFGGRSSGPYGG--- 343

  Fly   359 TGPGNSASKSGSEY-----DYGGYGSGYDYDYSNYVKQEGASNYGAGPR 402
                      |.:|     :.||||.           ...:|:||:|.|
Human   344 ----------GGQYFAKPRNQGGYGG-----------SSSSSSYGSGRR 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb27CNP_001162897.1 RRM1_DAZAP1 8..89 CDD:241018 38/80 (48%)
RRM2_DAZAP1 94..173 CDD:240773 29/95 (31%)
HNRNPA1NP_112420.1 Globular A domain 4..94 39/86 (45%)
RRM1_hnRNPA1 12..92 CDD:410154 37/79 (47%)
Globular B domain 95..185 29/89 (33%)
RRM2_hnRNPA3 105..184 CDD:409996 28/78 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 182..216 9/49 (18%)
RNA-binding RGG-box 218..240 6/27 (22%)
HnRNPA1 307..344 CDD:402981 13/64 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 317..372 19/94 (20%)
Nuclear targeting sequence (M9) 320..357 11/64 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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