Protein Alignment Hrb27C and sqd-1

DIOPT Version :9

• Sequence 1: NP_001162897.1
• Gene: Hrb27C / 33968
• FlyBaseID: FBgn0004838
• Length: 421
• Species: Drosophila melanogaster
• Sequence 2: NP_001380080.1
• Gene: sqd-1 / 177392
• WormBaseID: WBGene00022235
• Length: 308
• Species: Caenorhabditis elegans
• Alignment Length: 419
• Identity: 106/419 - (25%)
• Similarity: 153/419 - (36%)
• Gaps: 141/419 - (33%)

  Fly     4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
            :|..|:||||:|.|...|:||.:|.::|::....|..:..:||||||.||.|.........|...
 Worm    26 NEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90

  Fly    69 PHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEK 133
            ..|:.|::::.||...|.        ..|||:|||||:.:|.|||:.|.::|||.::...:|::.
 Worm    91 EQTIKGKSVEVKPAKSRE--------NKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQT 147

  Fly   134 KKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNSNNSTVGGAYGKLGNEC 198
            |..|.|.|:.||||.|.:..:::.......::.::|||.|
 Worm   148 KARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAVP------------------------- 187

  Fly   199 SHWGPHHAPINMMQGQNGQMGGPPLNMPIGAPNMMPGYQGWGTSPQQQQYG--YGNSGPGSYQGW 261
                         ||:         ..| ||...|||.:|        .||  .||:..|.|.||
 Worm   188 -------------QGK---------RFP-GAQGRMPGGRG--------MYGGRGGNNNSGWYAGW 221

  Fly   262 GAPPGPQGPPPQWSNYAGPQQTQGYGGYDMYNSTSTGAPSGPSGGGSWNSWNMPPNSAGPTGAPG 326
                |..|..|             ||        :|||        :|..|.
 Worm   222 ----GQIGAMP-------------YG--------ATGA--------AWGDWY------------- 240

  Fly   327 AGAGTATDMYSRAQAWATGGPSTTGPVGGMPRTGPGNSASKSGSEYDYGGYGSGYDYDYSNYVKQ 391
                               |....|..|.......|:|.........:.|..||:||..:...:|
 Worm   241 -------------------GNGYYGQQGAAHHNNSGSSQGYGSGYQSFAGNNSGFDYQQAQGARQ 286

  Fly   392 EGASNYGAGPRSAYGNDSSTQPPYATSQA 420
               .|.|. ||      ...||...|:||
 Worm   287 ---GNNGQ-PR------FQQQPQQQTAQA 305

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hrb27C	NP_001162897.1	RRM1_DAZAP1	8..89	CDD:241018	28/80 (35%)
		RRM2_DAZAP1	94..173	CDD:240773	29/78 (37%)
sqd-1	NP_001380080.1	RRM2_NsCP33_like	30..104	CDD:410187	26/73 (36%)
		RRM_SF	111..185	CDD:418427	27/73 (37%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910