DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb27C and sqd-1

DIOPT Version :10

Sequence 1:NP_476869.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_001380080.1 Gene:sqd-1 / 177392 WormBaseID:WBGene00022235 Length:308 Species:Caenorhabditis elegans


Alignment Length:419 Identity:106/419 - (25%)
Similarity:153/419 - (36%) Gaps:141/419 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68
            :|..|:||||:|.|...|:||.:|.::|::....|..:..:||||||.||.|.........|...
 Worm    26 NEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAR 90

  Fly    69 PHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEK 133
            ..|:.|::::.||...|.        ..|||:|||||:.:|.|||:.|.::|||.::...:|::.
 Worm    91 EQTIKGKSVEVKPAKSRE--------NKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQT 147

  Fly   134 KKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQNSNNSTVGGAYGKLGNEC 198
            |..|.|.|:.||||.|.:..:::.......::.::|||.|                         
 Worm   148 KARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAVP------------------------- 187

  Fly   199 SHWGPHHAPINMMQGQNGQMGGPPLNMPIGAPNMMPGYQGWGTSPQQQQYG--YGNSGPGSYQGW 261
                         ||:         ..| ||...|||.:|        .||  .||:..|.|.||
 Worm   188 -------------QGK---------RFP-GAQGRMPGGRG--------MYGGRGGNNNSGWYAGW 221

  Fly   262 GAPPGPQGPPPQWSNYAGPQQTQGYGGYDMYNSTSTGAPSGPSGGGSWNSWNMPPNSAGPTGAPG 326
                |..|..|             ||        :|||        :|..|.             
 Worm   222 ----GQIGAMP-------------YG--------ATGA--------AWGDWY------------- 240

  Fly   327 AGAGTATDMYSRAQAWATGGPSTTGPVGGMPRTGPGNSASKSGSEYDYGGYGSGYDYDYSNYVKQ 391
                               |....|..|.......|:|.........:.|..||:||..:...:|
 Worm   241 -------------------GNGYYGQQGAAHHNNSGSSQGYGSGYQSFAGNNSGFDYQQAQGARQ 286

  Fly   392 EGASNYGAGPRSAYGNDSSTQPPYATSQA 420
               .|.|. ||      ...||...|:||
 Worm   287 ---GNNGQ-PR------FQQQPQQQTAQA 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb27CNP_476869.1 RRM1_hnRNPA_hnRNPD_like 9..80 CDD:409763 24/70 (34%)
RRM2_DAZAP1 94..173 CDD:409765 29/78 (37%)
sqd-1NP_001380080.1 RRM2_NsCP33_like 30..104 CDD:410187 26/73 (36%)
RRM_SF 111..185 CDD:473069 27/73 (37%)

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