DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb27C and rbm-39

DIOPT Version :10

Sequence 1:NP_476869.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster
Sequence 2:NP_500025.1 Gene:rbm-39 / 176922 WormBaseID:WBGene00021921 Length:580 Species:Caenorhabditis elegans


Alignment Length:440 Identity:88/440 - (20%)
Similarity:143/440 - (32%) Gaps:173/440 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 EEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ 66
            ||.::..|.:..::.:|...:|..:|...|.:.|..::.::.:|||:|..:|.|.|..:|...|.
 Worm   165 EERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWDEESVPLGLA 229

  Fly    67 -NGPHTLDGRTIDPKPCNPRT------------LQKPKKGGGYKVFLGGLPSNVTETDLRTFFNR 118
             ||...:.......:.|..|.            ...|...|...|.:..|...:.|..:|..|..
 Worm   230 LNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAPGNKGPTHVLVENLHPKIDEKMIRDIFES 294

  Fly   119 YGKVTEVVIMYDQEKKKSRGFGFLSF----EEESSVEHVTN----ERYINLNGKQVE----IKKA 171
            :|::.::.:..| ..:::|||..::|    :.:.|.|.:.|    .|.|.|:.||..    :||.
 Worm   295 FGRIEKIDLEVD-SNRENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSIKQESQAPAVKKE 358

  Fly   172 EPRD----------------GSGG--------------------------QNSNNSTV------- 187
            |...                |:||                          |::.:|.:       
 Worm   359 EASIHQRSLDDVGDRQGFSLGAGGRQQLMAKLAQGTGSGMELTASAQMAAQHAGHSQIPSIATQC 423

  Fly   188 --------------------------------GGAY-------GKLGN---ECSHWGPHHAPINM 210
                                            |||.       .:.||   :|......|..::.
 Worm   424 FLLSNMFDPSKETEPAWDHDIREDVIEQCLAHGGALHVFVDKGSEQGNVYVKCPSIVIAHQAVSA 488

  Fly   211 MQGQ--NGQM----------------------------GGPPLNMPIGAPNMMPGYQGWGTSPQQ 245
            :.|:  :|::                            |..|: :|| .| |:|     ...||.
 Worm   489 LHGRWFSGKVITANYVPVNSYHDLFPDAVHARIVLTTRGAAPV-VPI-VP-MVP-----VVPPQG 545

  Fly   246 QQYGYGNSG---PGSYQGWGAPPGPQGPPPQWSNYAGPQQTQGYGGYDMY 292
            ...|||..|   |..    ||||    |||       |||...||||..|
 Worm   546 IANGYGAYGMMAPAH----GAPP----PPP-------PQQQGQYGGYGRY 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb27CNP_476869.1 RRM1_hnRNPA_hnRNPD_like 9..80 CDD:409763 17/71 (24%)
RRM2_DAZAP1 94..173 CDD:409765 22/90 (24%)
rbm-39NP_500025.1 SF-CC1 140..515 CDD:273721 59/350 (17%)

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