DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb27C and LOC11176155

DIOPT Version :10

Sequence 1:NP_476869.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster
Sequence 2:XP_003436593.1 Gene:LOC11176155 / 11176155 VectorBaseID:AGAMI1_003599 Length:420 Species:Anopheles gambiae


Alignment Length:81 Identity:26/81 - (32%)
Similarity:42/81 - (51%) Gaps:10/81 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 GLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYIN---LNG 163
            |:..:.||..|...|:|||.|.::.::||.:...|||:.|:.|:..|.....  :|.:|   |.|
Mosquito   297 GMNPDTTEKTLMKLFSRYGHVKDIKLIYDGKTNVSRGYSFIYFKHASDARRA--QRKLNGTMLEG 359

  Fly   164 KQVEI-----KKAEPR 174
            ::|.:     |..|||
Mosquito   360 RKVRVDFSRSKPHEPR 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb27CNP_476869.1 RRM1_hnRNPA_hnRNPD_like 9..80 CDD:409763
RRM2_DAZAP1 94..173 CDD:409765 23/78 (29%)
LOC11176155XP_003436593.1 PABP-1234 38..>381 CDD:130689 26/81 (32%)
RRM_SF 123..187 CDD:409669
RRM_SF 290..367 CDD:473069 22/71 (31%)
Blue background indicates that the domain is not in the aligned region.

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