DRSC/TRiP Functional Genomics Resources

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Protein Alignment x16 and RNA15

DIOPT Version :10

Sequence 1:NP_723226.1 Gene:x16 / 33967 FlyBaseID:FBgn0028554 Length:258 Species:Drosophila melanogaster
Sequence 2:NP_011471.1 Gene:RNA15 / 852838 SGDID:S000003012 Length:296 Species:Saccharomyces cerevisiae


Alignment Length:131 Identity:27/131 - (20%)
Similarity:50/131 - (38%) Gaps:19/131 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSRHPSDRKVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNP-----PGFAFVEFESARDAADA 60
            :..:|..|.||:|.:..:..:..:..:....|.:.::.:..:|     .|:||:||.....:|.|
Yeast    11 VQNNPPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASA 75

  Fly    61 VRGLDGRTV------CGRRARVELS------TGKYARSGGGGGGGGGGGGGGGLGGRDRGGGGRG 113
            ||.|:|..:      ||..:..::|      ..:|....|.....|......  .|.|....|..
Yeast    76 VRNLNGYQLGSRFLKCGYSSNSDISGVSQQQQQQYNNINGNNNNNGNNNNNS--NGPDFQNSGNA 138

  Fly   114 D 114
            :
Yeast   139 N 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
x16NP_723226.1 RRM_SRSF3_like 9..81 CDD:409808 19/88 (22%)
RNA15NP_011471.1 RRM_CSTF2_RNA15_like 18..94 CDD:409832 19/75 (25%)
CSTF_C 255..291 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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