DRSC/TRiP Functional Genomics Resources

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Protein Alignment x16 and AT5G04600

DIOPT Version :10

Sequence 1:NP_723226.1 Gene:x16 / 33967 FlyBaseID:FBgn0028554 Length:258 Species:Drosophila melanogaster
Sequence 2:NP_196080.1 Gene:AT5G04600 / 830337 AraportID:AT5G04600 Length:222 Species:Arabidopsis thaliana


Alignment Length:60 Identity:17/60 - (28%)
Similarity:32/60 - (53%) Gaps:8/60 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VYVGDLGNNARKNDLEYVFGAYGSLRSVWIARN-----PPGFAFVEFES---ARDAADAV 61
            :|:|.:.:...:.::|..|..:|:::.|.:|||     ...|.|::||.   |..||.|:
plant    62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
x16NP_723226.1 RRM_SRSF3_like 9..81 CDD:409808 17/60 (28%)
AT5G04600NP_196080.1 RRM_NIFK_like 61..134 CDD:409748 17/60 (28%)
PABP-1234 80..>204 CDD:130689 14/42 (33%)

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