DRSC/TRiP Functional Genomics Resources

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Protein Alignment x16 and AT3G15010

DIOPT Version :10

Sequence 1:NP_723226.1 Gene:x16 / 33967 FlyBaseID:FBgn0028554 Length:258 Species:Drosophila melanogaster
Sequence 2:NP_188119.1 Gene:AT3G15010 / 820730 AraportID:AT3G15010 Length:404 Species:Arabidopsis thaliana


Alignment Length:173 Identity:43/173 - (24%)
Similarity:58/173 - (33%) Gaps:56/173 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SDRKVYVGDLGNNARKNDLEYVFGAYGSLRS-----VWIARNPPGFAFVEFESARDA----ADAV 61
            |.||:||.::..:...:.|...|.|||.:..     ..:.....|||...:::|..|    ||.|
plant   165 SMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPV 229

  Fly    62 RGLDGR-----------------------------TVCGRRARVELSTGKYARSGG----GGGGG 93
            :.:||:                             .|.|....:....|.|..:||    ||..|
plant   230 KVIDGKHLNCKLAVDGKKGGKPGMPQAQDGGSGHGHVHGEGMGMVRPAGPYGAAGGISAYGGYSG 294

  Fly    94 GG------------GGGGGGLGGRDRGGGGRGDDKCYECGGRG 124
            |.            |.|..|.||...|.||.|....|  ||.|
plant   295 GPPAHHMNSTHSSMGVGSAGYGGHYGGYGGPGGTGVY--GGLG 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
x16NP_723226.1 RRM_SRSF3_like 9..81 CDD:409808 20/109 (18%)
AT3G15010NP_188119.1 RRM_SF 75..150 CDD:473069
RRM2_NsCP33_like 168..242 CDD:410187 18/73 (25%)
Blue background indicates that the domain is not in the aligned region.

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