DRSC/TRiP Functional Genomics Resources

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Protein Alignment x16 and cirbp

DIOPT Version :10

Sequence 1:NP_723226.1 Gene:x16 / 33967 FlyBaseID:FBgn0028554 Length:258 Species:Drosophila melanogaster
Sequence 2:NP_001017228.1 Gene:cirbp / 549982 XenbaseID:XB-GENE-492781 Length:166 Species:Xenopus tropicalis


Alignment Length:194 Identity:68/194 - (35%)
Similarity:88/194 - (45%) Gaps:41/194 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KVYVGDLGNNARKNDLEYVFGAYGSLRSVWI-----ARNPPGFAFVEFESARDAADAVRGLDGRT 68
            |::||.|.....:..||.||..||.:..|.:     ::...||.||.||:..||.||:..::|::
 Frog     7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKS 71

  Fly    69 VCGRRARVELSTGKYARSGGGGGGGGGGGGGGGL-GGRDRGGGGRGDDKCYECGGRGHFARHCRE 132
            |.||:.||: ..||.:....||..||..||.|.. |||.|||||   |:.|  ||...|      
 Frog    72 VDGRQIRVD-QAGKSSNDRRGGYRGGSSGGRGFFRGGRGRGGGG---DRGY--GGSSRF------ 124

  Fly   133 RKARQRRRSNSFSRSRSTSRRRRTRSKSGTRS-RSRSAGSVGRRSGRSNGRDENGSASRYSDHE 195
                 ..||..:             ..||:|. ..||.||.|.|||.|. ||   |...|:..|
 Frog   125 -----ENRSGGY-------------QSSGSRDYYGRSHGSYGDRSGGSY-RD---SYDSYTTQE 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
x16NP_723226.1 RRM_SRSF3_like 9..81 CDD:409808 27/76 (36%)
cirbpNP_001017228.1 RRM_CIRBP_RBM3 6..85 CDD:409883 28/78 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 68..166 46/131 (35%)

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