DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment x16 and Rbm4b

DIOPT Version :9

Sequence 1:	NP_723226.1	Gene:	x16 / 33967	FlyBaseID:	FBgn0028554	Length:	258	Species:	Drosophila melanogaster
Sequence 2:	NP_001007015.2	Gene:	Rbm4b / 474154	RGDID:	1359343	Length:	357	Species:	Rattus norvegicus

Alignment Length:	268	Identity:	64/268 - (23%)
Similarity:	98/268 - (36%)	Gaps:	57/268 - (21%)

- Green bases have known domain annotations that are detailed below.

  Fly     2 SRHPSDRKVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNPPGFAFVEFESARDAADAVRGLDG 66
            ::..:..|::||::.......:|...|..||.:....|.::   :|||..|.|.||.:|:||||.
  Rat    72 NKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDN 133

  Fly    67 RTVCGRRARVELSTGKYARSGGGGGGGGGGGGGGGLGGRDRGGGGRGDDKCYECGGRGHFARHCR 131
            ....|:|..|:|||.:...:.|.|               |:.|       ||.||..||:::.|.
  Rat   134 TEFQGKRMHVQLSTSRLRTAPGMG---------------DQSG-------CYRCGKEGHWSKECP 176

  Fly   132 -ERKARQRRRSNSFSRSRSTSRRRRTRSKSGT--------------RSRSRSAGSVGRRSGRSNG 181
             :|..|....:..::......|...|.....:              |.|.||..:|...:.
  Rat   177 VDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALDYYKRYRVRSYEAVAAAAA---- 237

  Fly   182 RDENGSASRYSDHERNGSGAVDSPPPPKRRYEDEDDDRVRG-SPRSRSRSRSASPAV-------- 237
                .||..|::...:....|.|...|........|...|. ...|.|.:.||:.|.
  Rat   238 ----ASAYNYAEQTMSHLPQVQSSAVPSHLNSTSVDPYDRHLLQNSGSAATSAAMAAAASSSYYG 298

  Fly   238 RRGSPPRR 245
            |..||.||
  Rat   299 RDRSPLRR 306

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
x16	NP_723226.1	RRM	<1..>82	CDD:223796	26/79 (33%)
x16	NP_723226.1	RRM_SRSF3_like	9..81	CDD:240819	25/71 (35%)
Rbm4b	NP_001007015.2	RRM1_RBM4	2..68	CDD:241050
		RRM2_RBM4	78..144	CDD:241051	22/68 (32%)
		ZnF_C2HC	161..176	CDD:197667	7/21 (33%)
		Interaction with TNPO3. /evidence=ECO:0000250	196..357		25/119 (21%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910