DRSC/TRiP Functional Genomics Resources

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Protein Alignment x16 and srsf1

DIOPT Version :10

Sequence 1:NP_723226.1 Gene:x16 / 33967 FlyBaseID:FBgn0028554 Length:258 Species:Drosophila melanogaster
Sequence 2:NP_001006919.1 Gene:srsf1 / 448766 XenbaseID:XB-GENE-486875 Length:267 Species:Xenopus tropicalis


Alignment Length:307 Identity:106/307 - (34%)
Similarity:122/307 - (39%) Gaps:109/307 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SDRKVYVGDLGNNARKNDLEYVFGAYGSLRSVWI--ARNPPGFAFVEFESARDAADAVRGLDGRT 68
            :|.::|||:|..:.|..|:|.||..||::|.:.:  .|..|.|||||||..|||.|||.|.||..
 Frog    14 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYD 78

  Fly    69 VCGRRARVEL---STGKYARSGGGGGGGGGGGGGGGLGGRDRGGGGRGDDKCYECGG--RGHFAR 128
            ..|.|.|||.   ..|...|.|||||||||||||||.||   ||||.|       ||  ||.:. 
 Frog    79 YDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGG---GGGGGG-------GGAPRGRYG- 132

  Fly   129 HCRERKARQRRRSNSFSRSRSTSRRRRTR------SKSGT----RSRSRSAGSVGRRSGRSNGRD 183
                                ..|||...|      ..||:    :...|.||.|           
 Frog   133 --------------------PPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDV----------- 166

  Fly   184 ENGSASRYSDHERNGSGA----------------------------------VDSPPPPK-RRYE 213
                  .|:|..|:|:|.                                  ||.|..|. .|..
 Frog   167 ------CYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSYGRSR 225

  Fly   214 DEDDDRVRGSPRSRSRSRSASPAVRRGSP---PRRRGDSSASRSVSR 257
            .....|.|...||.|||||.||...||||   ||.      |||.||
 Frog   226 SRSRSRSRSRSRSNSRSRSYSPRRSRGSPRYSPRH------SRSRSR 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
x16NP_723226.1 RRM_SRSF3_like 9..81 CDD:409808 35/76 (46%)
srsf1NP_001006919.1 RRM1_SRSF1 12..90 CDD:410010 36/75 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 90..137 29/77 (38%)
RRM2_SRSF1 132..215 CDD:410160 16/120 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..267 27/61 (44%)

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