DRSC/TRiP Functional Genomics Resources

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Protein Alignment x16 and srsf9

DIOPT Version :10

Sequence 1:NP_723226.1 Gene:x16 / 33967 FlyBaseID:FBgn0028554 Length:258 Species:Drosophila melanogaster
Sequence 2:NP_001004795.1 Gene:srsf9 / 448015 XenbaseID:XB-GENE-491310 Length:225 Species:Xenopus tropicalis


Alignment Length:214 Identity:63/214 - (29%)
Similarity:88/214 - (41%) Gaps:53/214 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DRKVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNPPG-----FAFVEFESARDAADAVRGLDG 66
            |.::|||:|..:.|:.:||.:|..||.:|::.: :|..|     |||:.|:..|||.|||...:|
 Frog    15 DGRIYVGNLPADIREKELEDLFDRYGRIRTIEL-KNRGGSSAAPFAFISFQDPRDAEDAVFARNG 78

  Fly    67 RTVCGRRARVELSTGKYARSGGGGGGGGGGGGGGG------------LGGRDRGGGGR------- 112
            ......|.|||     :.||..|.|||.||..|..            :.|....|..:       
 Frog    79 YEFGSCRLRVE-----FPRSFRGSGGGYGGSRGRNGPPSRRSEYRVIVSGLPPSGSWQDLKDHMR 138

  Fly   113 -GDDKCY---ECGGRG-----------HFARHCRERKARQRRRSNSFSR---SRSTSRRRRTRSK 159
             ..|.||   ...|.|           :..|...:.|.|......|:.|   .|:||     .|:
 Frog   139 EAGDVCYADVHKDGMGIVEFIRKEDMEYALRKLDDTKFRSHEGETSYIRVCPERNTS-----YSR 198

  Fly   160 SGTRSRSRSAGSVGRRSGR 178
            |.:|||.|.:....|||.|
 Frog   199 SRSRSRGRDSPYQSRRSPR 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
x16NP_723226.1 RRM_SRSF3_like 9..81 CDD:409808 28/76 (37%)
srsf9NP_001004795.1 RRM_SF 17..90 CDD:473069 28/78 (36%)
RRM2_SRSF9 110..191 CDD:410161 12/80 (15%)

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