DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment x16 and mod

DIOPT Version :9

Sequence 1:NP_723226.1 Gene:x16 / 33967 FlyBaseID:FBgn0028554 Length:258 Species:Drosophila melanogaster
Sequence 2:NP_001247401.1 Gene:mod / 43764 FlyBaseID:FBgn0002780 Length:542 Species:Drosophila melanogaster


Alignment Length:86 Identity:22/86 - (25%)
Similarity:41/86 - (47%) Gaps:6/86 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SDRKVYVGDLGNNA--RKNDLEYVFGAYGSLRSVWIARNPPGFAFVEFESARDAADAVRGLDGRT 68
            |:..:.|.::|.:.  ..:.||.:|..:|.:..:.:..:....|||.|:.:..|..|:..|||:|
  Fly   338 SELTLVVENVGKHESYSSDALEKIFKKFGDVEEIDVVCSKAVLAFVTFKQSDAATKALAQLDGKT 402

  Fly    69 VCGRRARVELSTGKYARSGGG 89
            |    .:.|....::.||..|
  Fly   403 V----NKFEWKLHRFERSTSG 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
x16NP_723226.1 RRM <1..>82 CDD:223796 19/77 (25%)
RRM_SRSF3_like 9..81 CDD:240819 18/73 (25%)
modNP_001247401.1 RRM_SF 177..244 CDD:302621
RRM_SF 260..327 CDD:240668
RRM_SF 342..411 CDD:240668 18/72 (25%)
RRM_SF 422..>465 CDD:302621
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23147
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.