DRSC/TRiP Functional Genomics Resources

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Protein Alignment x16 and rbm4.3

DIOPT Version :10

Sequence 1:NP_723226.1 Gene:x16 / 33967 FlyBaseID:FBgn0028554 Length:258 Species:Drosophila melanogaster
Sequence 2:NP_998482.1 Gene:rbm4.3 / 406277 ZFINID:ZDB-GENE-040426-1938 Length:341 Species:Danio rerio


Alignment Length:271 Identity:64/271 - (23%)
Similarity:92/271 - (33%) Gaps:69/271 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNPPGFAFVEFESARDAADAVRGLDGRTVCGRR 73
            |::|.:: .....::|..:|..||::....|.:|   ||||...::.:|.||::|||.....|:|
Zfish    79 KLHVANV-EKGTDDELRALFEDYGTVAECAIIKN---FAFVHMNNSDEAMDAIKGLDNTEFQGKR 139

  Fly    74 ARVELSTGKYARSGGGGGGGGGGGGGGGLGGRDRG------GGGRGDDKCYECGGRGHFARHCRE 132
            ..|::|..:            ..|.....|..|.|      .|.|.:...|..|..|:.......
Zfish   140 IHVQISKSR------------PRGEEDDYGHPDAGYWPPRYPGERPEPPGYPRGRYGYPPGPPPP 192

  Fly   133 RKARQRRRSNSFSRSRSTSRRRRTRSKSGTRSRSRSAGSVGRRSGRSNGRDENGSASRYSDHERN 197
            ......|||....|:.....|:|.......:.|:|..|..                  |.|  |.
Zfish   193 PPPPPPRRSPYPDRAAPAYERQRDVVDYYEKYRARPYGVA------------------YDD--RR 237

  Fly   198 GSGAVDSPPPPKRRYEDEDDDRVRGS------------------PRSRSRSRSASPAVRRGSPPR 244
            ..|....||||.....   .||:.|:                  .|.||..|.|.||     ||.
Zfish   238 PGGIPPPPPPPSSAIM---RDRMPGNGLDPYERRPLPPPPASFYARDRSPIRRAPPA-----PPA 294

  Fly   245 RRGDS-SASRS 254
            ..|:. |..||
Zfish   295 PAGNGYSYERS 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
x16NP_723226.1 RRM_SRSF3_like 9..81 CDD:409808 22/71 (31%)
rbm4.3NP_998482.1 RRM_SF 2..68 CDD:473069
RRM1_2_CoAA_like 79..143 CDD:409779 20/67 (30%)
Blue background indicates that the domain is not in the aligned region.

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