DRSC/TRiP Functional Genomics Resources

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Protein Alignment x16 and Hrb27C

DIOPT Version :10

Sequence 1:NP_723226.1 Gene:x16 / 33967 FlyBaseID:FBgn0028554 Length:258 Species:Drosophila melanogaster
Sequence 2:NP_476869.1 Gene:Hrb27C / 33968 FlyBaseID:FBgn0004838 Length:421 Species:Drosophila melanogaster


Alignment Length:133 Identity:34/133 - (25%)
Similarity:46/133 - (34%) Gaps:37/133 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KVYVGDLGNNARKNDLEYVFGAYGSLRSVWI-----ARNPPGFAFVEFESARDAADAVR----GL 64
            ||::|.|.:|..:.||...|..||.:..|.|     .:...||.|:.||..........    .|
  Fly    97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINL 161

  Fly    65 DGRTVCGRRARVELSTGKYARSGGGGGGGGG---GGGGGGLGGRDRGGGGRGDDKCYECGGRGHF 126
            :|:.|..::|.        .|.|.||.....   ||..|.||.              ||   .|:
  Fly   162 NGKQVEIKKAE--------PRDGSGGQNSNNSTVGGAYGKLGN--------------EC---SHW 201

  Fly   127 ARH 129
            ..|
  Fly   202 GPH 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
x16NP_723226.1 RRM_SRSF3_like 9..81 CDD:409808 21/80 (26%)
Hrb27CNP_476869.1 RRM1_hnRNPA_hnRNPD_like 9..80 CDD:409763
RRM2_DAZAP1 94..173 CDD:409765 21/83 (25%)
Blue background indicates that the domain is not in the aligned region.

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