DRSC/TRiP Functional Genomics Resources

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Protein Alignment x16 and CIRBP

DIOPT Version :10

Sequence 1:NP_723226.1 Gene:x16 / 33967 FlyBaseID:FBgn0028554 Length:258 Species:Drosophila melanogaster
Sequence 2:NP_001287758.1 Gene:CIRBP / 1153 HGNCID:1982 Length:297 Species:Homo sapiens


Alignment Length:237 Identity:70/237 - (29%)
Similarity:93/237 - (39%) Gaps:69/237 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARN-----PPGFAFVEFESARDAADAVRGLDGRT 68
            |::||.|..:..:..||.||..||.:..|.:.::     ..||.||.||:..||.||:..::|::
Human     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71

  Fly    69 VCGRRARVELSTGKYARSGGGGGGGGGGGGGGGLGGRDRGGGGRGDDKCYECGGRGHFARHCRER 133
            |.||:.||: ..||.:.:...|..||..||.|..    |||.|||                    
Human    72 VDGRQIRVD-QAGKSSDNRSRGYRGGSAGGRGFF----RGGRGRG-------------------- 111

  Fly   134 KARQRRRSNSFSRSRSTSRRRRTRSKSGTRSRSRSAGSVGRRSGRSNGRDENGSASRYSDHERNG 198
                          |..||....|...|.|..|||.|..|.|...|: |.::|.   |||....|
Human   112 --------------RGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSS-RSQSGG---YSDRSSGG 158

  Fly   199 SGAVDSPPPPKRRYEDEDDDRVRGSPRSRSRSRSAS---PAV 237
            |            |.|..|.      ..:|.|..|:   |||
Human   159 S------------YRDSYDS------YGKSHSEGATLLWPAV 182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
x16NP_723226.1 RRM_SRSF3_like 9..81 CDD:409808 27/76 (36%)
CIRBPNP_001287758.1 RRM_CIRBP_RBM3 6..85 CDD:409883 28/78 (36%)

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