DRSC/TRiP Functional Genomics Resources

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Protein Alignment x16 and hnrnpa3

DIOPT Version :10

Sequence 1:NP_723226.1 Gene:x16 / 33967 FlyBaseID:FBgn0028554 Length:258 Species:Drosophila melanogaster
Sequence 2:XP_031748359.1 Gene:hnrnpa3 / 100144993 XenbaseID:XB-GENE-5878765 Length:385 Species:Xenopus tropicalis


Alignment Length:217 Identity:57/217 - (26%)
Similarity:82/217 - (37%) Gaps:45/217 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 HPSDRKVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARN-----PPGFAFVEFESARDAADAVRG 63
            |.:.:|::||.:..:..:..|...|.:||.:.::.:..:     ..|||||.|:. .|..|.:..
 Frog   180 HLTVKKIFVGGIKEDTEEYHLRDYFQSYGKIETIEVMEDRQSGKKRGFAFVTFDD-HDTVDKIVV 243

  Fly    64 LDGRTVCGRRARVELSTGKY------ARSGGGGGGGGGGGG------------GGGLGGRDRGGG 110
            ....|:.|....|:.:..|.      |:.||..|||.|.||            |||.||...|||
 Frog   244 QKYHTINGHNCEVKKALSKQEMQTASAQRGGNYGGGPGYGGRGYGGSPGYGNQGGGYGGGGSGGG 308

  Fly   111 GRGDDKCYECG--GRGHFARHCRERKARQRRRSNSF----SRSRSTSRRRRTRSKSGTRSRSRSA 169
            |.|.|...|.|  |.|::               |.|    .:.:|.....:..|.||..|....:
 Frog   309 GGGYDGYNEGGNFGGGNY---------------NDFGNYGGQQQSNYGPMKGGSFSGRSSGGSGS 358

  Fly   170 GSVGRRSGRSNGRDENGSASRY 191
            |..|...|...|....|....|
 Frog   359 GPYGGGYGSGGGGGGGGGGGSY 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
x16NP_723226.1 RRM_SRSF3_like 9..81 CDD:409808 18/76 (24%)
hnrnpa3XP_031748359.1 RRM1_hnRNPA_like 94..171 CDD:409992
RRM2_hnRNPA3 184..263 CDD:409996 18/79 (23%)
HnRNPA1 328..>344 CDD:463312 2/15 (13%)
Blue background indicates that the domain is not in the aligned region.

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