Sequence 1: | NP_001260166.1 | Gene: | Rat1 / 33964 | FlyBaseID: | FBgn0031868 | Length: | 908 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_011342.1 | Gene: | XRN1 / 852702 | SGDID: | S000003141 | Length: | 1528 | Species: | Saccharomyces cerevisiae |
Alignment Length: | 854 | Identity: | 289/854 - (33%) |
---|---|---|---|
Similarity: | 411/854 - (48%) | Gaps: | 213/854 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGIIHPCTH 65
Fly 66 PEDKPAPK--NEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKETTE 128
Fly 129 KRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRQNNNPAWKGI 193
Fly 194 KVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREEFL 258
Fly 259 PNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGAEVKFIFVRLSVLREYLKQTLEM-- 321
Fly 322 --PNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVELYKKCVYKTRGYLTDSG 384
Fly 385 DVNLDRVQLIMTDLGNAEDQIFKSRQRREEQFKAR------DKARKRQ----------------- 426
Fly 427 ------ERNQDHGS-------------------------LNQSAFGASAVGPNSQQRSVGNYKEE 460
Fly 461 AAALRNRKRTSDMANLDD-------------------------EDEEENNDEVRLWEDGF---KD 497
Fly 498 RYYESKFDVAPGNQQFRYAVALQYVRGLCWVLKYYYQGCASWNWYFPYHYAPFASDFVNIQGLST 562
Fly 563 MFEKG-TKPFNPLEQLMGVFPAASSSHVPEPWAKLMSDPESPIIDFYPEDFKIDLNGKKFAWQGV 626
Fly 627 ALLPFVDEKRLFKALVPYYDQLTGEEVKRNKRGDNYLYISNQSPHYKKVKKISEKDDESVCKAIS 691
Fly 692 FDGMRGTLGKTELNTAISGVLKSPISGL-SDINDNITVTTTFRDPEYDEDYIFEAKRLENAVDPP 755
Fly 756 QVLPNEQSG 764 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Rat1 | NP_001260166.1 | XRN1 | 1..735 | CDD:227382 | 282/823 (34%) |
XRN_N | 1..255 | CDD:281193 | 120/255 (47%) | ||
XRN1 | NP_011342.1 | XRN1 | 1..955 | CDD:227382 | 289/854 (34%) |
XRN1_D2_D3 | 918..1005 | CDD:408140 | |||
Xrn1_D3 | 1087..1156 | CDD:408022 | |||
SH3_12 | 1163..1233 | CDD:407961 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 228 | 1.000 | Domainoid score | I421 |
eggNOG | 1 | 0.900 | - | - | E1_COG5049 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | otm46503 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100417 | |
Panther | 1 | 1.100 | - | - | O | PTHR12341 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
6 | 5.810 |