DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rat1 and XRN1

DIOPT Version :9

Sequence 1:NP_001260166.1 Gene:Rat1 / 33964 FlyBaseID:FBgn0031868 Length:908 Species:Drosophila melanogaster
Sequence 2:NP_011342.1 Gene:XRN1 / 852702 SGDID:S000003141 Length:1528 Species:Saccharomyces cerevisiae


Alignment Length:854 Identity:289/854 - (33%)
Similarity:411/854 - (48%) Gaps:213/854 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGIIHPCTH 65
            ||:|.|||::|.::|.::               .:.|...:|     ||||||||||.|:|.|||
Yeast     1 MGIPKFFRYISERWPMIL---------------QLIEGTQIP-----EFDNLYLDMNSILHNCTH 45

  Fly    66 PEDKPAPK--NEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKETTE 128
            ..|....|  .|:|:...|...||.||..::|:|:.|||||||||||||||||:||||.|.: .|
Yeast    46 GNDDDVTKRLTEEEVFAKICTYIDHLFQTIKPKKIFYMAIDGVAPRAKMNQQRARRFRTAMD-AE 109

  Fly   129 KRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRQNNNPAWKGI 193
            |.|:.|      :..|.::|    |||.||||.|||||.||.:|:|.|.||:||:.:|:..|:.:
Yeast   110 KALKKA------IENGDEIP----KGEPFDSNSITPGTEFMAKLTKNLQYFIHDKISNDSKWREV 164

  Fly   194 KVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREEFL 258
            ::|.|...||||||||||::||..::|.|.:.||:|.:.|.|||||||||:||.|:|.::|||..
Yeast   165 QIIFSGHEVPGEGEHKIMNFIRHLKSQKDFNQNTRHCIYGLDADLIMLGLSTHGPHFALLREEVT 229

  Fly   259 PNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGAEVKFIFVRLSVLREYLKQTLEM-- 321
                        ||....:...|                 ....|..:.||:||||::  ||.  
Yeast   230 ------------FGRRNSEKKSL-----------------EHQNFYLLHLSLLREYME--LEFKE 263

  Fly   322 --PNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVELYKKCVYKTRGYLTDSG 384
              ..:.|||:|||.|||::.:.|.:||||||:||.|.:.:||...|::.:|:.:..|.||:.:.|
Yeast   264 IADEMQFEYNFERILDDFILVMFVIGNDFLPNLPDLHLNKGAFPVLLQTFKEALLHTDGYINEHG 328

  Fly   385 DVNLDRVQLIMTDLGNAEDQIFKSRQRREEQFKAR------DKARKRQ----------------- 426
            .:||.|:.:.:..|...|...|:......|.|..:      :..||||                 
Yeast   329 KINLKRLGVWLNYLSQFELLNFEKDDIDVEWFNKQLENISLEGERKRQRVGKKLLVKQQKKLIGS 393

  Fly   427 ------ERNQDHGS-------------------------LNQSAFGASAVGPNSQQRSVGNYKEE 460
                  |:.|:..|                         |.:.||.......:|  :|.|:|   
Yeast   394 IKPWLMEQLQEKLSPDLPDEEIPTLELPKDLDMKDHLEFLKEFAFDLGLFITHS--KSKGSY--- 453

  Fly   461 AAALRNRKRTSDMANLDD-------------------------EDEEENNDEVRLWEDGF---KD 497
                 :.|...|..|.|:                         ||:||...|..::.:.|   |.
Yeast   454 -----SLKMDLDSINPDETEEEFQNRVNSIRKTIKKYQNAIIVEDKEELETEKTIYNERFERWKH 513

  Fly   498 RYYESKFDVAPGNQQFRYAVALQYVRGLCWVLKYYYQGCASWNWYFPYHYAPFASDFVNIQGLST 562
            .||..|......:::....:|..||.||.|||.|||:||.||:||:|:||||..||..  :||..
Yeast   514 EYYHDKLKFTTDSEEKVRDLAKDYVEGLQWVLYYYYRGCPSWSWYYPHHYAPRISDLA--KGLDQ 576

  Fly   563 MFEKG-TKPFNPLEQLMGVFPAASSSHVPEPWAKLMSDPESPIIDFYPEDFKIDLNGKKFAWQGV 626
            ..|.. :|||.|.:|||.|.|..|.:.:|..:..||.|.:|||.||||.:.::|.|||...|:.|
Yeast   577 DIEFDLSKPFTPFQQLMAVLPERSKNLIPPAFRPLMYDEQSPIHDFYPAEVQLDKNGKTADWEAV 641

  Fly   627 ALLPFVDEKRLFKALVPYYDQLTGEEVKRNKRGDNYLYISNQSPHYKKVKKISEKDDESVCKAIS 691
            .|:.|||||||.:|:.||..:|:.||..||:.|.:.:|                          |
Yeast   642 VLISFVDEKRLIEAMQPYLRKLSPEEKTRNQFGKDLIY--------------------------S 680

  Fly   692 FDGMRGTLGKTELNTAISGVLKSPISGL-SDINDNITVTTTFRDPEYDEDYIFEAKRLENAVDPP 755
            |            |..:..:.|||:.|: |||..|..|         :::||  ...|:::....
Yeast   681 F------------NPQVDNLYKSPLGGIFSDIEHNHCV---------EKEYI--TIPLDSSEIRY 722

  Fly   756 QVLPNEQSG 764
            .:|||.:.|
Yeast   723 GLLPNAKLG 731

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rat1NP_001260166.1 XRN1 1..735 CDD:227382 282/823 (34%)
XRN_N 1..255 CDD:281193 120/255 (47%)
XRN1NP_011342.1 XRN1 1..955 CDD:227382 289/854 (34%)
XRN1_D2_D3 918..1005 CDD:408140
Xrn1_D3 1087..1156 CDD:408022
SH3_12 1163..1233 CDD:407961
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 228 1.000 Domainoid score I421
eggNOG 1 0.900 - - E1_COG5049
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46503
orthoMCL 1 0.900 - - OOG6_100417
Panther 1 1.100 - - O PTHR12341
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.810

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