Protein Alignment Rat1 and XRN4

DIOPT Version :10

• Sequence 1: NP_609082.1
• Gene: Rat1 / 33964
• FlyBaseID: FBgn0031868
• Length: 908
• Species: Drosophila melanogaster
• Sequence 2: NP_175851.1
• Gene: XRN4 / 841891
• AraportID: AT1G54490
• Length: 947
• Species: Arabidopsis thaliana
• Alignment Length: 938
• Identity: 389/938 - (41%)
• Similarity: 517/938 - (55%)
• Gaps: 124/938 - (13%)

  Fly     1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGIIHPCTH 65
            ||||||:|||:.:||..|.:..|.:..|...|..|..|.|.|||||.||||||||||||||||.|
plant     1 MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGDLIPVDITRPNPNGFEFDNLYLDMNGIIHPCFH 65

  Fly    66 PEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKETTEKR 130
            ||.||||...|::..::||.||.||.:|||||:||:|||||||||||||||||||||||:..|..
plant    66 PEGKPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSRRFRAAKDAAEAE 130

  Fly   131 LEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRQNNNPAWKGIKV 195
            .|..|:|::....| ::...|||.|..|||.||||||||..||..|.|::..|.|:||.|:.:||
plant   131 AEEERLRKDFEMEG-QILSAKEKAETCDSNVITPGTPFMAILSVALQYYIQSRLNHNPGWRYVKV 194

  Fly   196 ILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREEF-LP 259
            ||||:|||||||||||.|||.||..|..||||:|.|.|.|||||||.|||||.:|:|:||.. .|
plant   195 ILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEVHFSILREVITYP 259

  Fly   260 NKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGAEVKFIFVRLSVLREYLKQTLEMPNL 324
            .:...|.:|...||....|.|...    |.|...|:||..: |:.|:.:.||||||:..|.:|:.
plant   260 GQQEKCFVCGQTGHFASDCPGKSG----SNNAAADIPIHKK-KYQFLNIWVLREYLQYELAIPDP 319

  Fly   325 PFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVELYKKCVYKTRGYLTDSGDVNLD 389
            ||..:|||.:||:||:|||||||||||:|:|||||||::.|:.:|:|......|||||||:|.||
plant   320 PFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRKEFTAMGGYLTDSGEVLLD 384

  Fly   390 RVQLIMTDLGNAEDQIFKSRQRREEQFKARDKARKRQERNQDHGSLNQSAFGASAVGPNSQQRSV 454
            ||:..:..:...||:||:.|.|.::.....::.::|..|:            .|.|.|
plant   385 RVEHFIQAVAVNEDKIFQKRTRIKQSMDNNEEMKQRSRRD------------PSEVPP------- 430

  Fly   455 GNYKEEAAALRNRKRTSDMANLDDEDEEENNDEVRLWEDGFKDRYYESKFDVA--PGNQQFRYAV 517
                                       |..:|:::|.|.|:|:|||..||...  ...:|.:..:
plant   431 ---------------------------EPIDDKIKLGEPGYKERYYAEKFSTTNPEETEQIKQDM 468

  Fly   518 ALQYVRGLCWVLKYYYQGCASWNWYFPYHYAPFASDFVNIQGLSTMFEKGTKPFNPLEQLMGVFP 582
            .|:||.|||||.:|||||..||.|::||||||||||..|:..|...|..| :||.|.:||||..|
plant   469 VLKYVEGLCWVCRYYYQGVCSWQWFYPYHYAPFASDLKNLPDLEITFFIG-EPFKPFDQLMGTLP 532

  Fly   583 AASSSHVPEPWAKLMSDPESPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFKALVPYYDQ 647
            ||||:.:|..:.|||:||.|||:.|||.||::|:|||:|||||:|.|||::||.|..|.....:.
plant   533 AASSNALPGEYRKLMTDPSSPILKFYPADFELDMNGKRFAWQGIAKLPFIEEKLLLAATRKLEET 597

  Fly   648 LTGEEVKRNKRGDNYLYISNQSP-------HYKKVKKISEKDDESVCKAISFD-----GMRGTLG 700
            ||.||.:||....:.||:....|       :|...:.:...:    |.....|     ||.|.|.
plant   598 LTVEEQQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHE----CLPWMIDPNSSQGMNGFLW 658

  Fly   701 KTELNTAISGVLKSPISGLSDINDNITVTTTFRDPEYDEDYIFEAKRLENAVDPPQVLP------ 759
            .:|.| .....:.||::||..|..|..:..|:..|. ...:|.|..|  .|:.|.::|.
plant   659 FSERN-GFQTRVDSPVNGLPCIEQNRALNVTYLCPA-KHSHISEPPR--GAIIPDKILTSVDIKP 719

  Fly   760 -----NEQSGNKHR------PVIGFNSHLTRAYVPDSGHRMLNAGIRNQQGGGGNGGGGGGYGQG 813
                 :|.:.|:.|      .|:|   .:....:.::.||:    |:|......:.|...|....
plant   720 FPPLWHEDNSNRRRQARDRPQVVG---AIAGPSLGEAAHRL----IKNTLNMKSSTGAASGLIDP 777

  Fly   814 GGYGQGIGGNQGQSYQNNSRNYNYNYNNNYNQHQGGGYQNNYNNRQQQQYGHNQRFNQDNSNQQQ 878
            .||           |:|...||:|...|.........|:..|::.....||   ::|    |..|
plant   778 NGY-----------YRNVPGNYSYGGVNRPRAPGPSPYRKAYDDDSSYYYG---KYN----NSTQ 824

  Fly   879 RNFNNYNGPRNNNY-QQQGGSRQQNQNY 905
            ..||  ||||   | ....||:..|:||
plant   825 GTFN--NGPR---YPYPSNGSQDYNRNY 847

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rat1	NP_609082.1	XRN1	1..735	CDD:227382	344/748 (46%)
XRN4	NP_175851.1	XRN1	1..849	CDD:227382	389/938 (41%)