Protein Alignment Rat1 and XRN2

DIOPT Version :10

• Sequence 1: NP_609082.1
• Gene: Rat1 / 33964
• FlyBaseID: FBgn0031868
• Length: 908
• Species: Drosophila melanogaster
• Sequence 2: NP_001190450.1
• Gene: XRN2 / 834261
• AraportID: AT5G42540
• Length: 1023
• Species: Arabidopsis thaliana
• Alignment Length: 804
• Identity: 345/804 - (42%)
• Similarity: 474/804 - (58%)
• Gaps: 80/804 - (9%)

  Fly     1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGR-NIYEDPTLPNPNGIEFDNLYLDMNGIIHPCT 64
            ||||:|:|||.::||..|.|..|.:.::.:.|. .|..|.:.|||||.|:||||||||||||||.
plant     1 MGVPSFYRWLIQRYPLTIQEVIEEEPLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGIIHPCF 65

  Fly    65 HPEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKETTEK 129
            ||||||:|....|:...:|:.|||||.:|||||||:||||||||||||||||:|||||||:..|.
plant    66 HPEDKPSPTTFTEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAKDAAEA 130

  Fly   130 RLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRQNNNPAWKGIK 194
            ..|..::|||....|.|||| |...:.||||.|||||.||..||..|.|::|.|.|::|.||.||
plant   131 AAEEEQLREEFEREGKKLPP-KVDSQVFDSNVITPGTEFMATLSFALRYYIHVRLNSDPGWKNIK 194

  Fly   195 VILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIRE-EFL 258
            |||||||||||||||||.|||..:..|.::|||.|.|.|.|||||||.|||||.:|:|:|| .|.
plant   195 VILSDANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLIMLSLATHEIHFSILREVVFF 259

  Fly   259 PNKPRPCDICNGFGHEMDKCVG--LGATAPTSANFKPDVPIGAEVKFIFVRLSVLREYLKQTLEM 321
            |.:...|.:|...||....|.|  ...|.....|.:.||.:  :..:.||.:.:|||||:..:::
plant   260 PGEEGKCFLCGQEGHRAADCEGKIKRKTGEMLDNTEADVVV--KKPYEFVNIWILREYLEHDMQI 322

  Fly   322 PNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVELYKKCVYKTRGYLTDSGDV 386
            |..  :.:.:|.:||::|:|||||||||||:|:|||||||::.|:.:||......:.|||||..:
plant   323 PGA--KKNLDRLIDDFIFICFFVGNDFLPHMPTLEIREGAIELLMSVYKNKFRSAKKYLTDSSKL 385

  Fly   387 NLDRVQLIMTDLGNAEDQIFKSR----QRREEQFKARDKARKRQERNQDHGSLNQSAFGASAVGP 447
            ||..|:..:..:|..|:|||:.|    ||:.|:|: |||||.:...|....:.....|....|
plant   386 NLRNVERFIKAVGMYENQIFQKRAQVQQRQSERFR-RDKARDKARDNARDNAQASRQFSGKLV-- 447

  Fly   448 NSQQRSVGNYKEEAAALRNRK--RTS-----DMANLDDE--------DEEEN------------- 484
              |..|:....:...:..:||  |.|     .:||::.|        |.||:
plant   448 --QLDSLDEVSDSLHSSPSRKYLRLSLDDNIGVANVETENSLKAEELDNEEDLKFKLKKLLRDKG 510

  Fly   485 ---------NDEVRLWEDGFKDRYYESKFDV--APGNQQFRYAVALQYVRGLCWVLKYYYQGCAS 538
                     .|:|:|.:.|:::||||.||..  ....:|.|..|.|:|..||||::.|||.|..|
plant   511 DGFRSGNGEQDKVKLNKVGWRERYYEEKFAAKSVEEMEQIRRDVVLKYTEGLCWIMHYYYHGVCS 575

  Fly   539 WNWYFPYHYAPFASDFVNIQGLSTMFEKGTKPFNPLEQLMGVFPAASSSHVPEPWAKLMSDPESP 603
            |||::||||||||||...::.|...||.|: ||.|..||:.|.|:||:..:||.:..||::|:||
plant   576 WNWFYPYHYAPFASDLKGLEKLDIKFELGS-PFKPFNQLLAVLPSASAHALPECYRSLMTNPDSP 639

  Fly   604 IIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFKALVPYYDQLTGEEVKRNKRGDNYLYISNQ 668
            |.||||.||:||:|||:::|||::.||||:||||.:|.......||.||::||....:.|::...
plant   640 IADFYPADFEIDMNGKRYSWQGISKLPFVEEKRLLEAAAQVEKSLTNEEIRRNSALFDMLFVVAS 704

  Fly   669 SPHYKKVKKIS---------------EKDDESVCKAIS------FDGMRGTLGKTELNTAISGVL 712
            .|..:.::.::               ||.|..:.:.|.      .|||.|.:.....::..| ..
plant   705 HPLGELIRSLNSRTNNLSNEERATIIEKIDPGLSEHIQKFLDVCSDGMNGYIASCGGDSQPS-CF 768

  Fly   713 KSPISGLSDINDNITVTTTFRDPE 736
            .|.:.|:.|:..|..:...::.||
plant   769 CSTVEGMEDVLTNQVICAIYKLPE 792

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rat1	NP_609082.1	XRN1	1..735	CDD:227382	343/801 (43%)
XRN2	NP_001190450.1	XRN1	1..>720	CDD:227382	330/729 (45%)