Protein Alignment Rat1 and pcm

DIOPT Version :9

• Sequence 1: NP_001260166.1
• Gene: Rat1 / 33964
• FlyBaseID: FBgn0031868
• Length: 908
• Species: Drosophila melanogaster
• Sequence 2: NP_001162796.1
• Gene: pcm / 32935
• FlyBaseID: FBgn0020261
• Length: 1613
• Species: Drosophila melanogaster
• Alignment Length: 673
• Identity: 265/673 - (39%)
• Similarity: 367/673 - (54%)
• Gaps: 101/673 - (15%)

  Fly     1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGIIHPCTH 65
            ||||.|||::|.:||.:               ..:..:..:|     ||||||||||||:|.|:|
  Fly     1 MGVPKFFRYISERYPCL---------------SELAREHCIP-----EFDNLYLDMNGIVHNCSH 45

  Fly    66 PEDKPA--PKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKETTE 128
            |:|...  ...|:::...||..:|:||.:::|::|.::::||||||||||||||||||.|:|..:
  Fly    46 PDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQ 110

  Fly   129 KRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRQNNNPAWKGI 193
            :..:.|:       ||     |..:.|.||||||||||.||.||.:.|..|:..:.:.:|.|:..
  Fly   111 QEAKAAQ-------RG-----ELREHERFDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRC 163

  Fly   194 KVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREEFL 258
            .||||....|||||||||||||..:.|||:||||:|.|.|.|||||:|||.|||.:|.::|||.
  Fly   164 TVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDADLIILGLCTHELHFVVLREEV- 227

  Fly   259 PNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGAEVKFIFVRLSVLREYLKQTLEMPN 323
                       .||..:.:         ||..         |.:|..:.|.:|||||:  ||...
  Fly   228 -----------KFGRNVKR---------TSVE---------ETRFFLLHLGLLREYLE--LEFDA 261

  Fly   324 L---PFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVELYKKCVYKT-RGYLTDSG 384
            |   ..:....:.:||||.|.|.|||||:||||.|.|...|:..|...|.. :|.| .|.:.::|
  Fly   262 LRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHISSNALPLLYRTYIG-IYPTLGGNINENG 325

  Fly   385 DVNLDRVQLIMTDLGNAEDQIFKSRQRREEQFKARDKARKRQERNQDHGSLNQSAFGASAVGPNS 449
            .:||.|:|:.::.|...|...||     |.....:....|.:..:.|.|.:.:|.
  Fly   326 KLNLRRLQIFISALTEVELDHFK-----EHADDLKYMNNKSEAFDMDVGEITESQ---------- 375

  Fly   450 QQRSVGNYKEEAAALRNRKRTSDMANLDDEDEEENNDE--VRLWE-DGFKDRYYESKFDVAPGNQ 511
                  |...:..||.|:    .|...||:.||:.:||  |.|.| ..:|..:|.:||...| |.
  Fly   376 ------NLDSDLGALINK----SMLLYDDDSEEDCSDENAVLLKEFQNYKRNFYRNKFKRDP-ND 429

  Fly   512 QFRYAVALQYVRGLCWVLKYYYQGCASWNWYFPYHYAPFASDFVNIQGLSTMFEKGTKPFNPLEQ 576
            :....:...||..|.|||.|||:|..||:||:|:||.||.||..||:.:...|..|| ||.|.:|
  Fly   430 ELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPFHYTPFISDLKNIEQVEIAFHMGT-PFLPFQQ 493

  Fly   577 LMGVFPAASSSHVPEPWAKLMSDPESPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFKAL 641
            |:.|.||||:..:|..:..||..|.||:.:|||.:|:.||||||..|:.|.|:||:||.||..|:
  Fly   494 LLAVLPAASAKLLPVAYHDLMLLPTSPLAEFYPLEFESDLNGKKHDWEAVVLIPFIDEGRLLAAM 558

  Fly   642 VPYYDQLTGEEVKRNKRGDNYLY 664
            :|...||:.||.:||:.|..|:|
  Fly   559 LPCEAQLSLEERERNRHGPMYVY 581

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rat1	NP_001260166.1	XRN1	1..735	CDD:227382	265/673 (39%)
		XRN_N	1..255	CDD:281193	118/255 (46%)
pcm	NP_001162796.1	XRN1	1..843	CDD:227382	265/673 (39%)
		XRN_N	1..225	CDD:281193	118/255 (46%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45452932
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5049
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D150649at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	1	1.000	-	-		otm46801
orthoMCL	1	0.900	-	-		OOG6_100417
Panther	1	1.100	-	-	P	PTHR12341
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	7	6.750