DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rat1 and Xrn1

DIOPT Version :9

Sequence 1:NP_001260166.1 Gene:Rat1 / 33964 FlyBaseID:FBgn0031868 Length:908 Species:Drosophila melanogaster
Sequence 2:XP_006243656.1 Gene:Xrn1 / 300944 RGDID:1309713 Length:1728 Species:Rattus norvegicus


Alignment Length:725 Identity:276/725 - (38%)
Similarity:393/725 - (54%) Gaps:100/725 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGIIHPCTH 65
            ||||.|:||:|.:||.:               ..:.::..:|     ||||||||||||||.|:|
  Rat     1 MGVPKFYRWISERYPCL---------------SEVVKEHQIP-----EFDNLYLDMNGIIHQCSH 45

  Fly    66 PEDKPA--PKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKETTE 128
            |.|...  ..::|::...||..::.||.|::|||:.:||:|||||||||||||.||||:|||..:
  Rat    46 PNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAED 110

  Fly   129 KRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRQNNNPAWKGI 193
            |       .::.:.:|..||.|    ..||||||||||.||.||.:.|.|||:.:.:.:.:|:|:
  Rat   111 K-------IKKAIEKGETLPTE----ARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGV 164

  Fly   194 KVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREEFL 258
            .:..|....|||||||||::||.::|:|||||||:|.|.|.|||||||||.:||.:|:::|||..
  Rat   165 TIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVR 229

  Fly   259 PNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGAEVKFIFVRLSVLREYLKQTLE--M 321
            ....:...:|                ||            .|..|..:.||::|||:.....  .
  Rat   230 FGGKKTQRVC----------------AP------------EETTFHLLHLSLMREYIDYEFSALK 266

  Fly   322 PNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVELYKKCVYKTRGYLTDSGDV 386
            ..:.|:|..|:.:|||:.|.|.|||||:||||.|.|...|:..|...|...:.:..||:.:||.:
  Rat   267 EKITFKYDIEKIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYIAILPELGGYINESGHL 331

  Fly   387 NLDRVQLIMTDLGNAEDQIFKSRQRREEQFKARDKARKRQERNQDHGSLNQSAFGASAVGPNS-- 449
            ||.|.:..:..|.:.:          .|.|.......|..|....:..||::| ||:|....|  
  Rat   332 NLPRFERYLVKLSDFD----------REHFSEVFVDLKWFESKVGNKYLNEAA-GAAAEEAKSCK 385

  Fly   450 QQRSV-GNYKEEAAALRNRKRTSDMANLDD-EDEEENNDEVRLWEDGF---KDRYYESKFDVAPG 509
            .:|.| |.....:.|..:::....:|:.|: |||.|::|   |:|..|   |..||.:|..|...
  Rat   386 DKRKVKGQENSLSWAALDKREGEGVASRDNFEDETEDDD---LFETEFRQYKRTYYMTKMGVDVV 447

  Fly   510 NQQFRYAVALQYVRGLCWVLKYYYQGCASWNWYFPYHYAPFASDFVNIQGLSTMFEKGTKPFNPL 574
            :.:|....|..||:.:.|:|.|||.|..||:||:|||||||.||..||..|...||.| |||.|.
  Rat   448 SDEFLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLSDIRNISTLKIHFELG-KPFKPF 511

  Fly   575 EQLMGVFPAASSSHVPEPWAKLMSDPESPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFK 639
            |||:.|.|:||.:.:|..:..||:..:||||::||.|||.|||||:..|:.|.|:||:|||||.:
  Rat   512 EQLLAVLPSASKTLLPTCYQHLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLE 576

  Fly   640 ALVPYYDQLTGEEVKRNKRGD----------NYLYISNQSPHYKKVKKISEKDDESVCKAISFDG 694
            |:......|..||.|||:..:          .:.|.|.....:..:::.|.:     .|.||.|.
  Rat   577 AMETCNHSLKKEERKRNQHSECLMCWYDSDTEFTYSSPWPEKFPAIERCSTR-----YKIISLDA 636

  Fly   695 MRGTLGKTEL 704
            .|..:.|.::
  Rat   637 WRVDINKNKI 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rat1NP_001260166.1 XRN1 1..735 CDD:227382 276/725 (38%)
XRN_N 1..255 CDD:281193 120/255 (47%)
Xrn1XP_006243656.1 XRN1 1..735 CDD:227382 276/725 (38%)
XRN_N 1..226 CDD:281193 120/255 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5049
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D150649at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100417
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.720

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