DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rat1 and Xrn2

DIOPT Version :9

Sequence 1:NP_001260166.1 Gene:Rat1 / 33964 FlyBaseID:FBgn0031868 Length:908 Species:Drosophila melanogaster
Sequence 2:NP_036047.2 Gene:Xrn2 / 24128 MGIID:894687 Length:951 Species:Mus musculus


Alignment Length:963 Identity:502/963 - (52%)
Similarity:608/963 - (63%) Gaps:115/963 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGVPAFFRWLSRKYPSVIIECNENKQVDADTGRNIYEDPTLPNPNGIEFDNLYLDMNGIIHPCTH 65
            ||||||||||||||||:|:.|.|.|..:.: |..|..|.:.||||.:||||||||||||||||||
Mouse     1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECN-GVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTH 64

  Fly    66 PEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKETTEKR 130
            |||||||||||||||||||.|||||.|||||:|||||||||||||||||||||||||:||..|..
Mouse    65 PEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAA 129

  Fly   131 LEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRQNNNPAWKGIKV 195
            :|..|:|||:|::|..||||:.| |.||||||||||.|||.|:|||.|::.||.||:|.||.:.|
Mouse   130 VEKQRVREEILAKGGFLPPEEIK-ERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTV 193

  Fly   196 ILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREEFLPN 260
            |||||:.|||||||||||||:|||||:|||||.|.|||||||||||||||||||||||||||.||
Mouse   194 ILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREEFKPN 258

  Fly   261 KPRPCDICNGFGHEMDKCVGLGATAPTSANFKPD-----VPIGAEVKFIFVRLSVLREYLKQTLE 320
            ||:||.:||.||||:..|.||    |.....|.|     :|. ||.:|||:||:||||||::.|.
Mouse   259 KPKPCALCNQFGHEVKDCEGL----PREKKGKHDELADSLPC-AEGEFIFLRLNVLREYLERELT 318

  Fly   321 MPNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVELYKKCVYKTRGYLTDSGD 385
            |.:|||.:..||::|||||||||||||||||||||||||||:||||.:||..|:||.||||:||.
Mouse   319 MASLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGY 383

  Fly   386 VNLDRVQLIMTDLGNAEDQIFKSRQRREEQFKARDK-ARKRQERNQ----------DH--GSLN- 436
            |||.|||:||..:|..||.|||.|:..|:.|:.|.| .|||.:|:|          .|  ||.| 
Mouse   384 VNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPAFTPSGILTPHALGSRNS 448

  Fly   437 ----------QSAF-------GASAVGPNSQQRSVGNYKEEAAALRNRKRTSDMANLDDEDEEEN 484
                      |:|:       .:.::.||:...|.|:    .:.|...||.::    |.:.|.|.
Mouse   449 PGCQVASNPRQAAYEMRMQRNSSPSISPNTSFASDGS----PSPLGGIKRKAE----DSDSEPEP 505

  Fly   485 NDEVRLWEDGFKDRYYESKFDVAPGNQQFRYAVALQYVRGLCWVLKYYYQGCASWNWYFPYHYAP 549
            .|.|||||.|:|.|||::||||...:::||..|...||.||||||:|||||||||.||:|:||||
Mouse   506 EDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQSYVEGLCWVLRYYYQGCASWKWYYPFHYAP 570

  Fly   550 FASDFVNIQGLSTMFEKGTKPFNPLEQLMGVFPAASSSHVPEPWAKLMSDPESPIIDFYPEDFKI 614
            |||||..|..:|:.||||||||.|||||||||||||.:.:|..|.||||||:|.|||||||||.|
Mouse   571 FASDFEGIADMSSEFEKGTKPFKPLEQLMGVFPAASGNFLPPTWRKLMSDPDSSIIDFYPEDFAI 635

  Fly   615 DLNGKKFAWQGVALLPFVDEKRLFKALVPYYDQLTGEEVKRNKRGDNYLYISNQSPHYKKVKKI- 678
            ||||||:|||||||||||||:||..||...|..||.||.:||..|.:.|::....|....:.:: 
Mouse   636 DLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGGDVLFVGKLHPLRDFILELY 700

  Fly   679 ----SEKDD--ESVCKAISFDGMRGTLGKTELNTAISGVLKSPISGLSDINDNITVTTTFRDPEY 737
                :|..|  ..:|     .|::||....|........:.||:..|.|:..|..|:..|:||::
Mouse   701 QTGSTEPVDVPPELC-----HGIQGTFSLDEEAILPDQTVCSPVPMLRDLTQNTAVSINFKDPQF 760

  Fly   738 DEDYIFEAKRLENAVDPPQVL-PNE----QSGNKHRPVIGFNSHLTRAYVPDSGHRMLNAGIRNQ 797
            .|||:|:|..|..|..|..|| |.:    .:|.:.:|.:|||......::..:..|.|       
Mouse   761 AEDYVFKAAMLPGARKPATVLKPGDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTL------- 818

  Fly   798 QGGGGNGGGGGGYGQGGGYGQGIGGNQGQSYQNNS---RNYNYNYNNNYNQHQGGGYQ---NNYN 856
                       |:....|.|..:       |.|.:   .||.   .|||.....|..|   ...|
Mouse   819 -----------GHVTPRGSGTSV-------YTNTALPPANYQ---GNNYRPLLRGQAQIPKLMSN 862

  Fly   857 NRQQQQY-GHNQRFNQDNSNQQQRNFNNYNG-----PRNNNYQQQGGSRQQNQ 903
            .|.|..: |....|       ||..|....|     |.|...|.|..:.|.||
Mouse   863 MRPQDSWRGPPPLF-------QQHRFERSVGAEPLLPWNRMIQNQNAAFQPNQ 908

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rat1NP_001260166.1 XRN1 1..735 CDD:227382 454/776 (59%)
XRN_N 1..255 CDD:281193 193/253 (76%)
Xrn2NP_036047.2 XRN1 1..787 CDD:227382 467/805 (58%)
XRN_N 1..253 CDD:281193 193/253 (76%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 408..508 25/107 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 907..951 2/2 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167842452
Domainoid 1 1.000 426 1.000 Domainoid score I606
eggNOG 1 0.900 - - E1_COG5049
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6927
Inparanoid 1 1.050 899 1.000 Inparanoid score I381
Isobase 1 0.950 - 0 Normalized mean entropy S1160
OMA 1 1.010 - - QHG54717
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003161
OrthoInspector 1 1.000 - - oto93596
orthoMCL 1 0.900 - - OOG6_100417
Panther 1 1.100 - - LDO PTHR12341
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1677
SonicParanoid 1 1.000 - - X2128
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.740

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