Protein Alignment Polr1F and Polr1F

DIOPT Version :10

• Sequence 1: NP_609081.1
• Gene: Polr1F / 33963
• FlyBaseID: FBgn0042092
• Length: 253
• Species: Drosophila melanogaster
• Sequence 2: XP_061516633.1
• Gene: Polr1F / 1280588
• VectorBaseID: AGAMI1_015141
• Length: 412
• Species: Anopheles gambiae
• Alignment Length: 312
• Identity: 91/312 - (29%)
• Similarity: 144/312 - (46%)
• Gaps: 77/312 - (24%)

  Fly     5 LQKYIKFSVKELENYASSPESCVRCITTDMHLAMGPYGMANFKHALH--ELLIRTKVGFYDSGLD 67
            :.||.|||.:||:...:.|.|||..:..:..|::.|   .:.:|.:.  :..:..|:|.|.:.|:
Mosquito     6 IAKYTKFSAEELQKSTADPLSCVAAVQLNEILSLRP---RDCEHIVKGVKRCVTDKIGRYHAKLN 67

  Fly    68 GIVLGIKNIKVLGQTAGLRADDPTMHLVINADFYVFRPKAGAILSGVVRHISRHHVSAVIYRVFN 132
            |||||...|:|....:.||.|.|.:|:....|:|||:|:.|:.|.|.|.::|::.||||||||||
Mosquito    68 GIVLGYAKIRVDNALSALRLDSPYLHVRTTIDYYVFQPRIGSTLRGTVNYVSKNFVSAVIYRVFN 132

  Fly   133 TSIRFTNQSASREDIAMDQEIKIRIKNFDISNLMPYIEGELLLENGEAPKNKSIKFGSPPPEEKE 197
            .:::...|:|....:....:|...:.:.|:.:.:|.|||||:| ||..|    ::..:.|.|:
Mosquito   133 VTVKLGQQTARLHALKNGSDISFTVNSCDMKSELPVIEGELVL-NGVIP----VRIKTEPGEQ-- 190

  Fly   198 VKKEDPDEMLDALI---TEIKKEPEFTPRKKTSTKRK---------------NG----------- 233
              ..|.||:.:..:   |.:|:||: |.:||.|.|.|               ||
Mosquito   191 --NGDCDEVEEIAMETDTIVKQEPK-THKKKASKKSKEVPEAVSRAAAPPATNGVTAGMPVMDDS 252

  Fly   234 -----ENGDTT----------------------------KTKKVKKEIKSEP 252
                 ||.:.:                            |.||.|||.|..|
Mosquito   253 SSSESENDERSLLIKSLLGEMFGDEFTESTNSSKKDKKKKDKKEKKEKKKSP 304

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr1F	NP_609081.1	RNAP_I_Rpa43_N	19..107	CDD:239820	28/89 (31%)
		RPA43_OB	105..>135	CDD:465545	16/29 (55%)
Polr1F	XP_061516633.1	None