Protein Alignment Polr1F and polr1f

DIOPT Version :10

• Sequence 1: NP_609081.1
• Gene: Polr1F / 33963
• FlyBaseID: FBgn0042092
• Length: 253
• Species: Drosophila melanogaster
• Sequence 2: XP_002933336.2
• Gene: polr1f / 100145052
• XenbaseID: XB-GENE-5812677
• Length: 471
• Species: Xenopus tropicalis
• Alignment Length: 246
• Identity: 63/246 - (25%)
• Similarity: 107/246 - (43%)
• Gaps: 29/246 - (11%)

  Fly    12 SVKELENYASSPESCVRCITTDMHLAMGPYGMANFKHALHELLIRTKVGFYDSGLDGIVLGIKNI 76
            |..|......|..||:...|...||.:.|..:...:..:.|.| .|.:..|:.||.|:.:...:|
 Frog    29 SFSEACELVRSRYSCLVVETHRRHLTLSPKFLQKKRSGIQEQL-NTDLLKYNEGLKGVPVAYDSI 92

  Fly    77 KVLGQTAGLRADDPTMHLVINADFYVFRPKAGAILSGVVRHISRHHVSAVIYRVFNTSI----RF 137
            |::|:...:..|...:|:.|.|||.:|.||.|..|.|:|..::..|:..:::..||.||    :.
 Frog    93 KLVGELGDIFDDLGHIHINIEADFVIFNPKCGQTLVGIVNKVAPTHIGCLVHGCFNASIPKPPKM 157

  Fly   138 TNQSASREDIAMDQEIKIRIKNFDISNLMPY-IEGELLLENGEAPKNKSIKFGSPPPEEKEVKKE 201
            ..::..|..:.:|.||:..:...|...:..: |.|:|       .:....|....|.||...:.:
 Frog   158 PIENWQRIGVNIDDEIEFEVFRLDSDAVGVFCIRGKL-------DRRMEDKAYETPCEETAEQAD 215

  Fly   202 D--PDEMLDALITEIKKEPEFTPRKKTSTKRKNGENGDT-TKTKKVKKEIK 249
            |  .|:..|||             :.::.:....||||. .|.||.:|:.|
 Frog   216 DGTSDKDADAL-------------ESSNMESSVQENGDVQEKAKKKRKKQK 253

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr1F	NP_609081.1	RNAP_I_Rpa43_N	19..107	CDD:239820	25/87 (29%)
		RPA43_OB	105..>135	CDD:465545	9/29 (31%)
polr1f	XP_002933336.2	RNAP_I_Rpa43_N	36..123	CDD:239820	25/87 (29%)
		RPA43_OB	121..>153	CDD:465545	11/31 (35%)