DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr1F and mmd

DIOPT Version :10

Sequence 1:NP_609081.1 Gene:Polr1F / 33963 FlyBaseID:FBgn0042092 Length:253 Species:Drosophila melanogaster
Sequence 2:XP_002937857.1 Gene:mmd / 100101788 XenbaseID:XB-GENE-484435 Length:243 Species:Xenopus tropicalis


Alignment Length:64 Identity:17/64 - (26%)
Similarity:25/64 - (39%) Gaps:18/64 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KFSVKELENYAS---SPESCVRCI--TTDMH-LAMGPY------------GMANFKHALHELLI 55
            |:.:.||..|.:   ||...|..:  |..:| ||.|..            |:..|.||:..|.:
 Frog   153 KYKIVELLFYLAMGFSPALVVTSMNNTEGLHELAWGGLIYCLGVIFFKSDGIIPFAHAIWHLFV 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr1FNP_609081.1 RNAP_I_Rpa43_N 19..107 CDD:239820 14/55 (25%)
RPA43_OB 105..>135 CDD:465545
mmdXP_002937857.1 hlyIII 31..231 CDD:273425 17/64 (27%)
Blue background indicates that the domain is not in the aligned region.

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