DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rca1 and fbxo43

DIOPT Version :10

Sequence 1:NP_477214.1 Gene:Rca1 / 33959 FlyBaseID:FBgn0017551 Length:411 Species:Drosophila melanogaster
Sequence 2:NP_956725.2 Gene:fbxo43 / 393403 ZFINID:ZDB-GENE-040426-1645 Length:557 Species:Danio rerio


Alignment Length:438 Identity:93/438 - (21%)
Similarity:157/438 - (35%) Gaps:141/438 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 MNESGYTSFLAL---HNSTAETPFLLED------AEGENCRNASNTTTFFRGLNT--PSGHQEQD 78
            :.:||::| |.|   |:|:.:.....::      :.|...|.:.....  |.|:|  ..|.|.:|
Zfish   208 LEDSGFSS-LGLDKSHDSSVDHDGSFQELVAPAGSSGREKRRSRLERQ--RRLSTLREGGSQSED 269

  Fly    79 LYWGKPYPRTQPQKKFSAEEEPF----------------SMTPRLQDEHSLPKRRKKHFQSPHSS 127
            .:        :|:...:.::|.|                ::||.||..|::..|.::|  |.::|
Zfish   270 AH--------RPRHAHTCKDEVFEDGTPLSAATLKMEELTLTPALQVVHAISTRARQH--SKNTS 324

  Fly   128 PKKSKKLL---FPHIEEPPKNRFYG---GVEKLDIVAKLAQWQPALQCILRHVGAHTLDVMT--- 183
            .:...::|   .|:....|.:...|   |::.||::::|.:..      ||||.|..|.:::   
Zfish   325 LEDLLRVLEEDAPYRPRLPLSGLIGRKMGLQTLDLISELRKRN------LRHVLAIILSLLSAAD 383

  Fly   184 -----KVSPAWKQAVYRSQRDLERLQNHRLKLNLTKENPHVPKRCSHVPKANHTVPLQTSNHSSL 243
                 :||..|...:...:|...|.:||..:|....|.    .:.:|||.|:....|  :..|:|
Zfish   384 IYRFGQVSEEWSDVISEDKRAAHRRKNHIRELKSQLEG----GKLAHVPDADTRAAL--ACRSAL 442

  Fly   244 ANSAA---------SLMDSGNSSIHLMDVDAGRVLREQTQRVKCPRCGRGSRVFISEAAKCGENL 299
            .:..|         |:....::|.|...:...:.|........||||                  
Zfish   443 GSVQAQARTPHTHTSITPRQSNSKHTQFLQVAKTLFSDEFLKACPRC------------------ 489

  Fly   300 LSQTLPIGRTTSTFPCMTGPPLKRFLSLDLDEVRTSPQGPPYNFAECTSVICQFRFCVNCLCKSH 364
                        ..|.:..|            ||..        ..|:...|.||||..|||..|
Zfish   490 ------------QHPAVCHP------------VRAE--------GVCSWSDCSFRFCTACLCALH 522

  Fly   365 PGERCLVTELDTPSKLMMPRERLTP---PQRAQNRDPKITRKNSLKRL 409
            ....|      ||..|...|.|.|.   |..||:       |.:::||
Zfish   523 GSRDC------TPQPLTRRRSRRTDTLLPGSAQS-------KRNVRRL 557

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rca1NP_477214.1 BRcat_Rcat_RBR <342..371 CDD:459240 11/28 (39%)
fbxo43NP_956725.2 F-box_SF 361..409 CDD:459239 12/53 (23%)
BRcat_RBR_FBXO43 480..530 CDD:439026 20/105 (19%)

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