DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rca1 and fbxo43

DIOPT Version :9

Sequence 1:NP_477214.1 Gene:Rca1 / 33959 FlyBaseID:FBgn0017551 Length:411 Species:Drosophila melanogaster
Sequence 2:NP_956725.2 Gene:fbxo43 / 393403 ZFINID:ZDB-GENE-040426-1645 Length:557 Species:Danio rerio


Alignment Length:438 Identity:93/438 - (21%)
Similarity:157/438 - (35%) Gaps:141/438 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 MNESGYTSFLAL---HNSTAETPFLLED------AEGENCRNASNTTTFFRGLNT--PSGHQEQD 78
            :.:||::| |.|   |:|:.:.....::      :.|...|.:.....  |.|:|  ..|.|.:|
Zfish   208 LEDSGFSS-LGLDKSHDSSVDHDGSFQELVAPAGSSGREKRRSRLERQ--RRLSTLREGGSQSED 269

  Fly    79 LYWGKPYPRTQPQKKFSAEEEPF----------------SMTPRLQDEHSLPKRRKKHFQSPHSS 127
            .:        :|:...:.::|.|                ::||.||..|::..|.::|  |.::|
Zfish   270 AH--------RPRHAHTCKDEVFEDGTPLSAATLKMEELTLTPALQVVHAISTRARQH--SKNTS 324

  Fly   128 PKKSKKLL---FPHIEEPPKNRFYG---GVEKLDIVAKLAQWQPALQCILRHVGAHTLDVMT--- 183
            .:...::|   .|:....|.:...|   |::.||::::|.:..      ||||.|..|.:::   
Zfish   325 LEDLLRVLEEDAPYRPRLPLSGLIGRKMGLQTLDLISELRKRN------LRHVLAIILSLLSAAD 383

  Fly   184 -----KVSPAWKQAVYRSQRDLERLQNHRLKLNLTKENPHVPKRCSHVPKANHTVPLQTSNHSSL 243
                 :||..|...:...:|...|.:||..:|....|.    .:.:|||.|:....|  :..|:|
Zfish   384 IYRFGQVSEEWSDVISEDKRAAHRRKNHIRELKSQLEG----GKLAHVPDADTRAAL--ACRSAL 442

  Fly   244 ANSAA---------SLMDSGNSSIHLMDVDAGRVLREQTQRVKCPRCGRGSRVFISEAAKCGENL 299
            .:..|         |:....::|.|...:...:.|........||||                  
Zfish   443 GSVQAQARTPHTHTSITPRQSNSKHTQFLQVAKTLFSDEFLKACPRC------------------ 489

  Fly   300 LSQTLPIGRTTSTFPCMTGPPLKRFLSLDLDEVRTSPQGPPYNFAECTSVICQFRFCVNCLCKSH 364
                        ..|.:..|            ||..        ..|:...|.||||..|||..|
Zfish   490 ------------QHPAVCHP------------VRAE--------GVCSWSDCSFRFCTACLCALH 522

  Fly   365 PGERCLVTELDTPSKLMMPRERLTP---PQRAQNRDPKITRKNSLKRL 409
            ....|      ||..|...|.|.|.   |..||:       |.:::||
Zfish   523 GSRDC------TPQPLTRRRSRRTDTLLPGSAQS-------KRNVRRL 557



Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170595859
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_114765
Panther 1 1.100 - - O PTHR15493
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.930

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