DRSC/TRiP Functional Genomics Resources

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Protein Alignment nrv2 and Shbg

DIOPT Version :9

Sequence 1:NP_001014475.1 Gene:nrv2 / 33953 FlyBaseID:FBgn0015777 Length:323 Species:Drosophila melanogaster
Sequence 2:NP_035497.1 Gene:Shbg / 20415 MGIID:98295 Length:403 Species:Mus musculus


Alignment Length:114 Identity:25/114 - (21%)
Similarity:41/114 - (35%) Gaps:31/114 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 SLKQMVYDSEDNSYFG--RSMDSWAKIGIFYVAFYGVLAALVAICM---WAFFQTLDPRIPKWTL 86
            |.:...:|.|...::|  .:.|.|..:|:        .|..:.|.:   ||              
Mouse    73 SFEFRTWDPEGVIFYGDTNTEDDWFLLGL--------RAGQLEIQLHNAWA-------------- 115

  Fly    87 DRSLIGTNPGLGFRPLPPVD---NVESTLIWYKGTQHENYKHWTDSLDD 132
             |..:|..|.|......||:   |.:|.|:|..|.:....:..:.||.|
Mouse   116 -RLTVGFGPRLDDGRWHPVELKMNGDSLLLWVDGKEMLCLRQISASLAD 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nrv2NP_001014475.1 Na_K-ATPase 24..317 CDD:278704 25/114 (22%)
ShbgNP_035497.1 Laminin_G_1 76..206 CDD:333802 24/111 (22%)
LamG 225..369 CDD:389952
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3927
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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