DRSC/TRiP Functional Genomics Resources

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Protein Alignment LUBEL and Rnf31

DIOPT Version :9

Sequence 1:NP_723214.2 Gene:LUBEL / 33950 FlyBaseID:FBgn0031857 Length:2892 Species:Drosophila melanogaster
Sequence 2:NP_001102338.2 Gene:Rnf31 / 364386 RGDID:1305513 Length:1062 Species:Rattus norvegicus


Alignment Length:945 Identity:247/945 - (26%)
Similarity:382/945 - (40%) Gaps:219/945 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly  2139 PTNQETDTIAHTEVVSSTGTRLETELPNPAMESILPSQ---------SVQEDI-----------K 2183
            |..||........:|:.....|.||| |..:::..|.|         ||::|:           :
  Rat   134 PGGQEEPDEYQVAIVTLEVLLLRTEL-NLLLQNTHPRQNALDQLLRDSVEDDMLQLSEFHPLLRE 197

  Fly  2184 VEAIPIQSAP---------------------------PIAD-------------SETRP-AEQPV 2207
            :...|:.|||                           |..|             ..|.| |.|..
  Rat   198 IVPGPLPSAPGHTPGPCFLCGSAPGTLHCPACNQASCPACDLLFHGHPSRAHHLRHTLPGAHQTT 262

  Fly  2208 ELVLEIPSEVEPTPVEEPTALP----ITPAPPIVDSESRPVEPPVETVLEEPKKV------TP-- 2260
            .|...:|:..:|.|.....|:.    .:|.|.   :...|...|....|.||..|      .|  
  Rat   263 NLSSSLPASSQPRPHSSSLAMGDSSLSSPDPA---NACLPWHCPTCATLNEPWAVFCAACSQPKG 324

  Fly  2261 -SMKGKTANSGTASKGP-------STSSSTKTNKS-----TVSKIPKPTNEPTNKSNS------- 2305
             .::|:.::.||....|       :..|.|..|::     .:.:.|:....|:...:|       
  Rat   325 CKVRGRESSQGTGVLEPEPARDQWACQSCTFENEAAAVLCAICERPRLAQPPSLVVDSHDAGVYQ 389

  Fly  2306 TPLNKKVPLRSKS-------------FSAPMGISSV--------------KRIQEVYLQKQSSSI 2343
            .||.::..|.|.:             .|.|:.:.::              ..:::...|..||..
  Rat   390 QPLKQEDTLLSAAQSQVWHCDHCTFCNSGPVWVCAMCNRTRSPIPAQPYPSSLEKGLSQPGSSQH 454

  Fly  2344 ATSRVPL--------KSSPVTKKSINDAISRFNSNQADGPSTSGAAAA----------------- 2383
            .:|.:|.        :...:.|:|: ..::.....:|.|.|.....:|                 
  Rat   455 LSSSLPASCGDPEKQRQDKMRKESL-QLVNMIQEGEAAGASPEEIFSALQYSGTEVPLQWLRSEL 518

  Fly  2384 ----AAAALLKPRSQPRIPKKKYHETCFSDDDYETS------ATEEEQEEPNLAEPQKAEQLKRK 2438
                ...|.|..:..|.:       ..||..:...:      ..:|..||...|..:|.::|:..
  Rat   519 SYVLEMVAELAGQRDPEL-------GAFSCQEARKAWLDRHGNLDEAVEECVRARRRKVQELQSL 576

  Fly  2439 MSMP--------------VFRAYPSVQEPVIE--------------------DPAILARKYVDQE 2469
            ...|              |.||...:|...:|                    |...|.|:.:...
  Rat   577 GFEPKEGSLQALFQHGGDVARALTELQRQRLEPFHQRLWGRDPEPTPCWDGLDRQSLVRRLLAVY 641

  Fly  2470 LVTNIAEAQIAATLVS---MKFSEDVALWAARECSDLDQAIAMLQQECELCMNSYPMNQMVSMLK 2531
            .:.:...|::|..|:.   ..:.....:.|.|...|......:|.|||.:|..:.|.|:|.:::.
  Rat   642 TLPSWGRAELALALLQETPRNYELLDVVEAVRHSQDRAFLRRLLAQECAVCGWALPRNRMQALIS 706

  Fly  2532 CLHKCCKQCAKSYFTVQITDRSINDCSCPFCKLPELSNEAQHEDEHLEYFSNLDIFLKSILDNDV 2596
            |....|.:|.:.:||:.:.::.|.|..||.|..|:|:::||    .|.|||.|||.|:..|:.|.
  Rat   707 CECTICPECFRQHFTIALKEKHITDMVCPACGRPDLTDDAQ----LLSYFSTLDIQLRESLEPDA 767

  Fly  2597 HELFQRKLRDRSLLQDPNFKWCIQCSSGFFARPKQKRLICPDCGSVTCAQCRKPWERQHEGSSCE 2661
            :.||.:||.:..|::||.|.||.|||.||....:|....||.|....|.:|::.||.||.|.|||
  Rat   768 YALFHKKLTEAVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCE 832

  Fly  2662 AYLEWKRENDPELQAQGVQEHLAQNGIDCPKCKFRYSLARGGCMHFTCTQCKFEFCYGCARPFMM 2726
            .:..|||.||||.||||:..:|.:||||||||||.|:|||||||||.||||:.:||.||...|..
  Rat   833 DFQNWKRTNDPEYQAQGLAMYLQENGIDCPKCKFSYALARGGCMHFHCTQCRHQFCSGCYNAFYA 897

  Fly  2727 GAKCTVSTYCAKLGLHAHHPRNCLFYLRDKIPLQLQFLLKEQNVKFDTEPMQIKDESSSSSKARA 2791
            ..||.......|..||.||||:|||||||....:||.||::.||.|:|||       .:.::|..
  Rat   898 KNKCPDPNCKVKKSLHGHHPRDCLFYLRDWPAARLQKLLQDNNVMFNTEP-------PAGTRAVP 955

  Fly  2792 QARCPIPLQKETPQGLVDTVCNTEVPDKHAGMCRTHYVEYLAGKVAKAGIDPLPIFDLTDCVQEL 2856
            ...|.:..|||.|.|..|..|..|.|..:||:|:.||.|||...:....:||..::::.:.....
  Rat   956 GGGCRVMEQKEVPSGFRDEACGKETPPGYAGLCQAHYKEYLVSLINAHSLDPATLYEVEELETAT 1020

  Fly  2857 RRRGIALPERGPWDTDEI--YKNMCSEVIKKHIPL 2889
            .|.....|:  |.|.:::  |:....:.:::.:||
  Rat  1021 ARYLHLTPQ--PMDGEDLPAYQARLLQKLREEVPL 1053

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LUBELNP_723214.2 Bbox1_HOIP 89..132 CDD:380873
Med15 <336..>483 CDD:312941
ZnF_RBZ 737..761 CDD:197784
RanBP2-type Zn finger 738..757 CDD:275376
HOIP-UBA 1036..1184 CDD:406963
PRK01741 1199..>1402 CDD:234977
rne <1482..1771 CDD:236766
Streccoc_I_II <2159..>2307 CDD:411384 44/240 (18%)
RING-HC_RNF169 2513..2563 CDD:319465 15/49 (31%)
IBR 2598..2660 CDD:214763 26/61 (43%)
IBR <2690..2724 CDD:396187 24/33 (73%)
E3_UbLigase_RBR 2760..2858 CDD:407926 31/97 (32%)
Rnf31NP_001102338.2 PUB 51..152 CDD:301591 4/17 (24%)
RanBP2-type Zn finger 300..319 CDD:275376 5/18 (28%)
RanBP2-type Zn finger 348..367 CDD:275376 3/18 (17%)
RanBP2-type Zn finger 407..426 CDD:275376 2/18 (11%)
HOIP-UBA 473..617 CDD:293283 23/151 (15%)
PdxA <523..>594 CDD:294567 12/77 (16%)
UBA_RNF31 561..615 CDD:270510 10/53 (19%)
NMD3 689..>739 CDD:282790 15/49 (31%)
IBR 769..831 CDD:214763 26/61 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349189
Domainoid 1 1.000 135 1.000 Domainoid score I4846
eggNOG 1 0.900 - - E1_KOG1812
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006359
OrthoInspector 1 1.000 - - oto97212
orthoMCL 1 0.900 - - OOG6_106001
Panther 1 1.100 - - LDO PTHR16004
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X6141
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.700

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