DRSC/TRiP Functional Genomics Resources

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Protein Alignment LUBEL and Rnf216

DIOPT Version :9

Sequence 1:NP_723214.2 Gene:LUBEL / 33950 FlyBaseID:FBgn0031857 Length:2892 Species:Drosophila melanogaster
Sequence 2:NP_996993.1 Gene:Rnf216 / 108086 MGIID:1344349 Length:910 Species:Mus musculus


Alignment Length:897 Identity:181/897 - (20%)
Similarity:307/897 - (34%) Gaps:261/897 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1953 DGQRAETKSPEDEVVILL------DEESQMESSIAQSESNASLDSHSSESETSKVVLKEFVPSGD 2011
            :|....:.|.::|.:.:|      .:|..::..:..:|      :|..::....::        .
Mouse    29 EGPITISDSSDEEGIPMLVTPATEQQEDDLDDDVILTE------THKPQTSRPNLI--------K 79

  Fly  2012 PAKQNLSELVEDTQRLIKQMRDEISMDEFESTDEDEYSDEYSDEYDEGEEEEWYDSEGEEEGDFD 2076
            ||.|     .:|..||.:: |...|..:||:...:.:|...:..:..|.::   |||.|..|..|
Mouse    80 PAAQ-----WQDLNRLGEE-RPRKSRADFEADIHNYFSFCNNSLFGSGAQD---DSEDEYGGFLD 135

  Fly  2077 GEEGNTYNEHASYIEEASTGDE--GTEIED---IMEEDEDLADDDEPL--QSQIPLDIEPVI--- 2131
            .|.|....|.........|.|:  ...:|.   |:.|:..|..:.|||  |:|...|.|..:   
Mouse   136 LESGKKEGEAKPGPSSKQTADDIVNPRLEQKVIILGENGLLFPESEPLEVQNQSSEDSETELLSN 200

  Fly  2132 --SPALSVTP------------------------TNQETDTIAHTEVVSSTGTR-LETELPNPAM 2169
              .||.||..                        |||......|:|  |..|.. ...:.|.||.
Mouse   201 PGEPAASVDDQLIGEEYWLDHPYFQAPNPQPQERTNQVVPQERHSE--SEMGPMFFRHDFPEPAF 263

  Fly  2170 ESILPSQSVQEDIKVEAIPIQSAPPIADSETR------------PAEQPVELVL---------EI 2213
            ....|.   ||.|...|.| |.|.|:.:.|.:            |...|.|..|         |:
Mouse   264 PRPEPQ---QEGIPGPASP-QPAHPLGELEDQQLAIDEDPGPAFPLSGPQEANLANMWEQEAAEV 324

  Fly  2214 PSEVEPTPVEEPTA-LPITPAPPIVDSESRPVEPPVET------------VLEEPKKVTPSMKGK 2265
            ..::.|..|:|..| .|        |..|..||..:..            :||.|.  .|..:.:
Mouse   325 DQDLIPLLVKETEARFP--------DVASGYVEEIIHLKNYYDLNVLCNFLLENPD--YPKREDR 379

  Fly  2266 TANSGTASKGPSTSSSTKTNKSTVSKIPKPTNEPTNKSNSTPLNKKVPLRSKSFSAPMGISSVKR 2330
            ....      ||:|.....:.:.:.||     :..:.|..|||:::..::    :|.:.::..|.
Mouse   380 LIIH------PSSSLLASQDDAKLPKI-----DFFDYSKLTPLDQRCFIQ----AADLLMADFKM 429

  Fly  2331 IQEVYLQKQSSSIATSRVPLKSS-PVTKKSINDAISRFNSNQADGPSTSGAAAAAAAALLKPRSQ 2394
            :       .|..|..:...||.. .:|:|:.:|||.::   |...|.|||               
Mouse   430 L-------SSQDIKWALHELKGHYAITRKAFSDAIKKW---QELSPETSG--------------- 469

  Fly  2395 PRIPKKKYHETCFSDDDYETSATEEEQEEPNLAEPQKAEQLKRKMSMPVFRAYPSVQEPVIEDPA 2459
            .|..:|:.::..|.|..:         |:.|:       :::::|..             :|:..
Mouse   470 KRKKRKEMNQYSFIDFKF---------EQGNI-------KIEKRMFF-------------LENKR 505

  Fly  2460 ILARKYVDQELVTNIAEAQIAATLVSMKFSEDVALWAARECSDLDQAIAMLQQ------------ 2512
            ...|.|..|.|:..:.:.|        :|.|.    ..:|.::.:..:..||.            
Mouse   506 RHCRYYDHQALLPAVKQEQ--------EFYEQ----KIKEMAEHEDFLLALQMNEEQYQKDGQLI 558

  Fly  2513 ECELCMNSYPMNQMVSMLKC--LHKCCKQCAKSYFTVQITDRSINDCSCP----FCKLPELSNEA 2571
            ||..|...:|..::.   :|  .|..||:|...|....:.....::.||.    .|..|.     
Mouse   559 ECRCCYGEFPFEELT---QCADAHLFCKECLIRYAQEAVFGSGKSELSCMEGSCTCSFPT----- 615

  Fly  2572 QHEDEHLEYFSNLDIFLKSILDNDVHELFQRKLRDR--SLLQDPNFKWCIQCSSGFFARPKQKRL 2634
                      |.|:..|...:   :::.::||..:.  :...|...: |..||.........||.
Mouse   616 ----------SELEKVLPQTI---LYKYYERKAEEEVAAAYADELVR-CPSCSFPALLDSDVKRF 666

  Fly  2635 ICPD--CGSVTCAQCRKPWERQHEGSSCEAYLEWKRENDPELQAQGVQEHLAQNGI-DCPKCKFR 2696
            .||:  |...||.:|:..| ::|.|.:||..    .|.|.......::|.:....| .|.||...
Mouse   667 SCPNPRCRKETCRKCQGLW-KEHNGLTCEEL----AEKDDIKYRTSIEEKMTAARIRKCHKCGTG 726

  Fly  2697 YSLARGGCMHFTCTQCKFEFCY-----------GCARPFMMGAKCTVSTYCA 2737
            . :...||...:| :|..:.||           .|..|...||.|...:.|:
Mouse   727 L-IKSEGCNRMSC-RCGAQMCYLCRVSINGYDHFCQHPRSPGAPCQECSRCS 776

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LUBELNP_723214.2 Bbox1_HOIP 89..132 CDD:380873
Med15 <336..>483 CDD:312941
ZnF_RBZ 737..761 CDD:197784
RanBP2-type Zn finger 738..757 CDD:275376
HOIP-UBA 1036..1184 CDD:406963
PRK01741 1199..>1402 CDD:234977
rne <1482..1771 CDD:236766
Streccoc_I_II <2159..>2307 CDD:411384 37/182 (20%)
RING-HC_RNF169 2513..2563 CDD:319465 12/55 (22%)
IBR 2598..2660 CDD:214763 17/65 (26%)
IBR <2690..2724 CDD:396187 10/44 (23%)
E3_UbLigase_RBR 2760..2858 CDD:407926
Rnf216NP_996993.1 RING-HC_RBR_RNF216 558..614 CDD:319544 13/58 (22%)
IBR 700..750 CDD:396187 12/51 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1812
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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