DRSC/TRiP Functional Genomics Resources

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Protein Alignment homer and homer3b

DIOPT Version :10

Sequence 1:NP_001036341.2 Gene:homer / 33944 FlyBaseID:FBgn0025777 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_957407.1 Gene:homer3b / 394088 ZFINID:ZDB-GENE-040426-739 Length:360 Species:Danio rerio


Alignment Length:410 Identity:140/410 - (34%)
Similarity:212/410 - (51%) Gaps:93/410 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGEQPIFTCQAHVFHIDPKTKRTWITASMKAVNVSFFYDSSRNLYRIISVEGTKAVINSTITPNM 65
            |||||:|:.:||||.|||.|||.||.||..||.||||:|:.|::||||||.||||:|||||||||
Zfish     1 MGEQPLFSVKAHVFQIDPATKRNWIPASKHAVTVSFFFDAGRSVYRIISVGGTKAIINSTITPNM 65

  Fly    66 TFTQTSQKFGQWSDVRANTVYGLGFASEAELTKFVEKFQEVKEATKNAM-KSANGSNAVTPTTSA 129
            |||:||||||||:|.||||||||||::|.:|.:|.|:|:|.|||.:... ||......::|..:.
Zfish    66 TFTKTSQKFGQWADSRANTVYGLGFSTEQQLQQFSEQFKEFKEAARLVRDKSQEKFELLSPGLNI 130

  Fly   130 NTSPISGRAVGSMQNDNTAIDPHTVEPPNMSNTNTQNANPDSPSHKLLNTSDVKADIGSATPSPQ 194
            :...:                      |...:.:.|                          || 
Zfish   131 SAPQL----------------------PQALSVDRQ--------------------------SP- 146

  Fly   195 PTSGVTGGGGVTISSGGSIVGMHTGPGAGATAEQQLKYENERLKMALAQSCANAKKWEIELATLK 259
            |..||.|      ||...:.       ...:|:.:...|.|:::..|::........|.||.:|:
Zfish   147 PLLGVNG------SSEDKLF-------RSKSADMEQTTEKEQMRKMLSEGSICEINSEAELFSLR 198

  Fly   260 NNNIRLTSALQESTANVDEWKRQLHTYKEENIRLKRDMEQLCVGGGVVAAAGGGATEDELRREV- 323
            ::|.:|.:||.::.:::::||:||..|:||..||:..:.:|....||.|.:..|  .:||.:.: 
Zfish   199 DSNTKLVAALHDANSSIEQWKKQLAEYQEETERLREQVAELEAQSGVSAFSEMG--NEELTQSIA 261

  Fly   324 ---ATLKARTE-------------QLQKELMQ-----QELELKSANISLREKSNDQTLAKLSEVN 367
               |.:||:.|             :|:||..:     |:||.|::.:..:.::.:..||...|  
Zfish   262 EMEALIKAKDEEIKVLRNNKPDFSELEKEKQEASQRMQDLEAKNSELEKQVETAENALASSKE-- 324

  Fly   368 GVFAKHLSELYGVQKDMESL 387
               |:..:|. .|||.:|:|
Zfish   325 ---AQSRAET-AVQKAIETL 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
homerNP_001036341.2 EVH1_Homer_Vesl 3..111 CDD:269917 76/107 (71%)
SMC_prok_B <207..>389 CDD:274008 51/203 (25%)
homer3bNP_957407.1 EVH1_Homer_Vesl 3..111 CDD:269917 76/107 (71%)
Smc <191..>360 CDD:440809 45/158 (28%)

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