DRSC/TRiP Functional Genomics Resources

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Protein Alignment homer and Homer3

DIOPT Version :9

Sequence 1:NP_001036341.2 Gene:homer / 33944 FlyBaseID:FBgn0025777 Length:531 Species:Drosophila melanogaster
Sequence 2:XP_006252952.1 Gene:Homer3 / 29548 RGDID:620706 Length:445 Species:Rattus norvegicus


Alignment Length:352 Identity:133/352 - (37%)
Similarity:177/352 - (50%) Gaps:78/352 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EQPIFTCQAHVFHIDPKTKRTWITASMKAVNVSFFYDSSRNLYRIISVEGTKAVINSTITPNMTF 67
            |||||:.:||||.|||.|||.||.|...|:.||:|||::||:|||||:.|.||:||||:||||||
  Rat     6 EQPIFSTRAHVFQIDPATKRNWIPAGKHALTVSYFYDATRNVYRIISIGGAKAIINSTVTPNMTF 70

  Fly    68 TQTSQKFGQWSDVRANTVYGLGFASEAELTKFVEKFQEVKEATKNAMKSANGSNAVTPTTSANTS 132
            |:||||||||:|.||||||||||.||.:||:|.|||||||||.:.|.:.:.....:|.|..|..|
  Rat    71 TKTSQKFGQWADSRANTVYGLGFGSEQQLTQFAEKFQEVKEAARLAREKSQDGGELTSTALAMAS 135

  Fly   133 PISGRAVGSMQNDNTAIDPHTVEPPNMSNTNTQNANPDSPSHKLLNTSDVKADIGSATPSPQPTS 197
                               |.|.|..:.:||       .|..||..:....|        |.|| 
  Rat   136 -------------------HQVPPSPLVSTN-------GPEEKLFRSQSADA--------PGPT- 165

  Fly   198 GVTGGGGVTISSGGSIVGMHTGPGAGATAEQQLKYENERLKMALAQSCANAKKWEIELATLKNNN 262
                                               |.||||..|::......:||.|...|:::|
  Rat   166 -----------------------------------ERERLKKMLSEGSVGEVQWEAEFFALQDSN 195

  Fly   263 IRLTSALQESTANVDEWKRQLHTYKEENIRLKRDMEQLCVGGGVVAAAGGGATEDE-LRREVATL 326
            .||..||:|:.|...:|::||...:.|...|::.:.:|   ...|||....|.|.| ..:.|..|
  Rat   196 QRLAGALREANAAATQWRQQLEVQRAEAEHLRQRVAEL---EAQVAAEPVRAGEKEATSQSVEQL 257

  Fly   327 KARTEQLQKELMQQELELKSANISLRE 353
            :||.:...:|:.    .||:.:...||
  Rat   258 EARVQTKDQEIQ----TLKNQSTGPRE 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
homerNP_001036341.2 EVH1_Homer_Vesl 3..111 CDD:269917 78/107 (73%)
Homer3XP_006252952.1 EVH1_Homer_Vesl 6..114 CDD:269917 78/107 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 164 1.000 Domainoid score I3844
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 244 1.000 Inparanoid score I3208
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1251658at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46188
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR10918
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1808
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1010.030

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