DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp and Thbs3

DIOPT Version :10

Sequence 1:NP_523495.2 Gene:Tsp / 33941 FlyBaseID:FBgn0031850 Length:1060 Species:Drosophila melanogaster
Sequence 2:NP_001292387.1 Gene:Thbs3 / 681309 RGDID:1596780 Length:955 Species:Rattus norvegicus


Alignment Length:1076 Identity:415/1076 - (38%)
Similarity:552/1076 - (51%) Gaps:211/1076 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LTFVDVASLS----LDPVASAELEQFIRKGDV-VISTRHIRPR---------------RKLHISI 60
            |..:|:.::|    :..||.......:..||: ::||..:.|:               |.|..|:
  Rat    24 LQVIDLLTVSESRQMAAVAEKVRTALLTAGDIYLLSTFRLPPKQGGVLFGLYSRQDNTRWLEASV 88

  Fly    61 EALFMIDFPMLKHKMSFFLDRKQQRVTLDISANGATESRNFEIPNINETSTIRSLALQFSKNR-- 123
            ..           |::..|.|.|:.       :|...:.|.:...:.:..|..:|......:|  
  Rat    89 VG-----------KINKVLVRYQRE-------DGKVHAVNLQQAGLADGRTHTALLRLRGPSRPS 135

  Fly   124 --ITLHVDCKASTHHDIDMNLAKLYTQMDDPVIKLFRERKYPLHFDGDMEHSLQRANCQKGNHRR 186
              :.|:||||....|      |.|......|          |....| :|            .|.
  Rat   136 PGLQLYVDCKLGDQH------AGLPALAPIP----------PAEVSG-LE------------IRT 171

  Fly   187 GNRRMLRNKITEREKNKKRDVRGWYEP-------TIAREGVVDHRHQEVPTDVERGDIPVLN--- 241
            |.:..||             ::|:.|.       ::||.|.:    .|.|.   :||..:.|   
  Rat   172 GQKAYLR-------------MQGFVESMKIILGGSMARVGAL----SECPF---QGDESIHNAVT 216

  Fly   242 -------GDCEDALARSLSDLLALVKLLREDVAHQRQEIAYLRMLLENCAGCKNPLTTDNQLRIE 299
                   |:...||...|:....::..||:|:..|.:|::.:|..:..|..|             
  Rat   217 SALQSILGEQTKALVTQLTLFNQILVELRDDIRDQVKEMSLIRNTIMECQVC------------- 268

  Fly   300 PDCRSANPCYPGVECLDSAAGPRCGHCPLGFIGDGKSCKPGVTCAHHMCYPGVQCHDTVNGAQCD 364
                                         ||                        |:.       
  Rat   269 -----------------------------GF------------------------HEQ------- 273

  Fly   365 SCPAGYEGDGRTCSLRNPCLDTPCPSGAQCLQVGYPPYFHCISCPMGHEVNGTSCRDMNECLLYD 429
                           |:.|..:||..|..|::|...|.:.|..||.|...|||.|.|::||...|
  Rat   274 ---------------RSHCSPSPCFRGVDCMEVYEYPGYRCGPCPPGLRGNGTHCEDIDECAHAD 323

  Fly   430 PCDELATCTNLSPGFQCSPCPVGFDGTHAHGYFADYYSVDYRRQTCLDVDECRTG-FFRCPEHST 493
            ||...::|.|..|||.|..||.|:.||...|...||....  :|.|.|:|||..| ...|..:|.
  Rat   324 PCFLGSSCINTMPGFHCEACPQGYKGTRVSGVGIDYARAS--KQVCSDIDECNDGNNGGCDPNSI 386

  Fly   494 CINEIGSYRC-QCHEGYVTNGTYSCLDRSSVFMC--PDGTVCDRNAVCLRMDNIRHKCHCNVGWA 555
            |.|.:||::| .|..|::.|.:..|....:   |  |..:.|..:|.||...|....|.||||||
  Rat   387 CTNTVGSFKCGPCRLGFLGNQSQGCTPART---CHSPAHSPCHIHAHCLFERNGAVSCQCNVGWA 448

  Fly   556 GNGLICGRDTDVDGWPDQAIGCPE--LRCQRDNCPKLPNSGQEDADLDGHGDGCDDDADGDNVQN 618
            |||.:||.|||:||:||||:.|.:  ..|::|||...|||||||||.||.||.||||||||.::|
  Rat   449 GNGNVCGPDTDIDGYPDQALPCMDNNKHCKQDNCLLTPNSGQEDADNDGVGDQCDDDADGDGIKN 513

  Fly   619 SQDNCWLAYNTEQLDSDGDKVGDVCDNCVLKYNPRQLDTDEDGLGDECDGDIDNDSIPNALDNCP 683
            .:|||.|..|.:|.:||.|..||.||||....|..|.|||.:|.||.||.|:|.|.|||.|||||
  Rat   514 VEDNCRLFPNKDQQNSDTDSFGDACDNCPNVPNNDQKDTDGNGEGDACDNDVDGDGIPNGLDNCP 578

  Fly   684 LLPNPSQSDVDNDGVGDACDNCPNLPNPDQKDRDMDFVGDACHRDIDGDDDGVPNSLDNCPMVSN 748
            .:|||.|:|.|.|||||.||:||.:.||.|.|.|.|.|||.|..:.|.|.||..::.||||.:.|
  Rat   579 KVPNPLQTDRDEDGVGDTCDSCPEMSNPTQTDADSDLVGDVCDTNEDSDGDGHQDTKDNCPQLPN 643

  Fly   749 SDQLDTDGDGTGDECDDDMDGDGIPNY----KDNCPLAKNPKQDDFNRNGKGDSCEDDEDVDGVP 809
            |.|||:|.||.|||||.|.|.||:|:|    .|||.|..||.|.|.:.||.||.||||.|.|.|.
  Rat   644 SSQLDSDNDGLGDECDSDDDNDGVPDYVPPGPDNCRLVPNPNQKDSDGNGVGDVCEDDFDNDAVV 708

  Fly   810 NGMDNCPNNSMIHHTDFRTLQTIPLDPKGLSQADPNWVVHANGTEIVQTLNSDPGLAVGKDAFGG 874
            :.:|.||.::.:..||||..||:.|||:|.:|.||||||...|.|||||:|||||||||..||.|
  Rat   709 DPLDVCPESAEVTLTDFRAYQTVILDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNG 773

  Fly   875 VDFDGTFYINDDTDDDYAGFVFSYQSSYKYYVVQWKKGTQTYWEPRPFTASAAPGIQIKLVNSTE 939
            |||:|||::|..||||||||:||||.|.::|||.||:..||||:..||.|.|.||:|:|.|.|..
  Rat   774 VDFEGTFHVNTVTDDDYAGFLFSYQDSGRFYVVMWKQTEQTYWQATPFRAVAQPGLQLKAVTSIS 838

  Fly   940 GPGPMMRNSLWHEGNTDGEARLLWKDPKNIAWKERTSYRWSLVHRPAIGLIRLQMHEGNRLIFDS 1004
            |||..:||:|||.|:|..:.||||.||:|:.|:::|||||.|:|||.:|.||::::||.:|:.||
  Rat   839 GPGEHLRNALWHTGHTPDQVRLLWTDPRNVGWRDKTSYRWRLLHRPQVGYIRVKLYEGPQLVADS 903

  Fly  1005 GNVFDSTLKGGRLGVFCFSQRMIIWSNLQYKCNNRV 1040
            |.:.|::::|||||||||||..||||||||:||:.|
  Rat   904 GVIIDTSMRGGRLGVFCFSQENIIWSNLQYRCNDTV 939

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TspNP_523495.2 coiled coil 245..286 CDD:293927 10/40 (25%)
TSPcc_insect 245..286 CDD:293927 10/40 (25%)
EGF_CA 421..457 CDD:238011 16/35 (46%)
EGF_CA 477..508 CDD:429571 13/32 (41%)
TSP3 repeat_1C 563..595 CDD:275367 17/33 (52%)
TSP3 repeat_short 632..654 CDD:275365 10/21 (48%)
TSP_3 656..690 CDD:367074 22/33 (67%)
TSP3 repeat_long 656..690 CDD:275366 22/33 (67%)
TSP3 repeat_short 691..713 CDD:275366 13/21 (62%)
TSP_3 714..751 CDD:367074 17/36 (47%)
TSP3 repeat_long 714..751 CDD:275365 17/36 (47%)
TSP3 repeat_short 752..787 CDD:275366 22/38 (58%)
TSP_3 789..822 CDD:367074 15/32 (47%)
TSP_C 841..1037 CDD:461725 120/195 (62%)
Thbs3NP_001292387.1 LamG 20..192 CDD:473984 40/227 (18%)
coiled coil 226..268 CDD:293925 10/41 (24%)
TSP-3cc 226..268 CDD:293925 10/41 (24%)
EGF_CA 315..351 CDD:238011 16/35 (46%)
EGF_3 377..406 CDD:463759 9/28 (32%)
TSP3 repeat_1C 456..490 CDD:275367 17/33 (52%)
MSCRAMM_ClfA <457..710 CDD:468110 143/252 (57%)
TSP3 repeat_short 527..549 CDD:275365 10/21 (48%)
TSP_3 550..585 CDD:367074 22/34 (65%)
TSP3 repeat_long 550..585 CDD:275366 22/34 (65%)
TSP3 repeat_short 586..608 CDD:275366 13/21 (62%)
TSP_3 609..646 CDD:367074 17/36 (47%)
TSP3 repeat_long 609..646 CDD:275365 17/36 (47%)
TSP3 repeat_short 647..686 CDD:275366 22/38 (58%)
TSP_3 687..721 CDD:367074 15/33 (45%)
TSP_C 740..937 CDD:461725 121/196 (62%)

Return to query results.
Submit another query.