DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp and ism2b

DIOPT Version :10

Sequence 1:NP_523495.2 Gene:Tsp / 33941 FlyBaseID:FBgn0031850 Length:1060 Species:Drosophila melanogaster
Sequence 2:NP_001018345.1 Gene:ism2b / 553163 ZFINID:ZDB-GENE-050523-4 Length:437 Species:Danio rerio


Alignment Length:314 Identity:69/314 - (21%)
Similarity:102/314 - (32%) Gaps:110/314 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   586 NCPKLPNS--GQEDADLDGHGDGCDD---DADGDNVQNSQDNCWLAYNTEQLDSDGDKVGDVCDN 645
            |.|.|.|:  |.::.::....:..||   |.:.|.|: ...|.|   :|....|..:.:|.....
Zfish    85 NLPDLANADIGSQNPNIQVTIEVLDDPPMDVEMDLVK-EWSNDW---STSSPSSTVEWLGGKKLF 145

  Fly   646 CVLKYNPRQLDTDEDGLG---DECDGDIDNDS---IPNALDNCPLLPNPSQSDVD---------- 694
            ..|.:.....|:.|||.|   ||.| |.|.||   ||:.|         .::|.|          
Zfish   146 WPLFWGYTDADSGEDGTGQAEDEED-DYDYDSGEPIPSGL---------GKTDGDWTHNRYEEKE 200

  Fly   695 --------------------NDGVGDAC-----DNCPNLPNPDQKDRDMDFVGDACHRDID---- 730
                                :...||.|     .:|..:|.||    |.:.||.....:::    
Zfish   201 EEWSTWSPCSVTCGHGNQTRSRSCGDFCTSTESQSCDLVPCPD----DWNSVGHVFPFEMENGTE 261

  Fly   731 --GDDDG-------------------VPNSLDNCPM-----VSNS--DQLDTDGDGTGDECDDDM 767
              |.|.|                   |...|.|||.     |||:  ..||...:.:....|...
Zfish   262 PYGTDVGSCEKWLNCKSEFLQRYLQQVFTELPNCPCSYPSHVSNNIVSLLDVGHERSFQWRDASG 326

  Fly   768 DGDGIPNYKDNCPLAKNPKQDDFNRNG----KGDSCEDDEDV-------DGVPN 810
            ..:.:..||   |.|::..:...::||    ....|.||...       .|.||
Zfish   327 PKERLDIYK---PSARSCLRSGLSKNGTTLAAQHCCYDDNKQLITRGKGAGTPN 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TspNP_523495.2 coiled coil 245..286 CDD:293927
TSPcc_insect 245..286 CDD:293927
EGF_CA 421..457 CDD:238011
EGF_CA 477..508 CDD:429571
TSP3 repeat_1C 563..595 CDD:275367 4/10 (40%)
TSP3 repeat_short 632..654 CDD:275365 3/21 (14%)
TSP_3 656..690 CDD:367074 15/39 (38%)
TSP3 repeat_long 656..690 CDD:275366 15/39 (38%)
TSP3 repeat_short 691..713 CDD:275366 8/56 (14%)
TSP_3 714..751 CDD:367074 14/68 (21%)
TSP3 repeat_long 714..751 CDD:275365 14/68 (21%)
TSP3 repeat_short 752..787 CDD:275366 7/34 (21%)
TSP_3 789..822 CDD:367074 8/33 (24%)
TSP_C 841..1037 CDD:461725
ism2bNP_001018345.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 156..191 16/44 (36%)
TSP1 202..242 CDD:214559 5/39 (13%)
AMOP 266..406 CDD:461048 25/115 (22%)
Blue background indicates that the domain is not in the aligned region.

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